Scaffold Ga0099849_1003394

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1003394
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7350
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025982	Metagenome / Metatranscriptome	199	Y
F038646	Metagenome	165	Y
F058089	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_100339410	F002738	N/A	MTIDTYGLTFDQYEEFFDKNIRLAAKLYLKANTIVVEEGVTHADFKTLLDLYQEAVYATNDDCRRYQRSNNPEALKEATTDIFGITPTREELMEEIQSVNAKVEALTDYVAKLVEITTNGLNGVVKTLEG*
Ga0099849_100339411	F038646	N/A	MTERFSMQAPDDILEYARQLAADQPMKIPDHHSYHLDIPNDLHWELVRLGAELKMDYEVYAEEVLKAHAEDAISRRIVAKAYNDPRWVTKLKLECIDEPDGTMTIHIEWDEKDPDLLYWTNLGAKGQENFILTALRSACESVLSDHDD*
Ga0099849_100339412	F002333	N/A	MSTQTQLELNPAQACIYTRTNIGRAYQDFDDSEITGIYLRDNNCLVVRRDGSEQTYDRTLIKAAYSTYTHRLKDFFSYLGPNYRGPSVWHNNAYILFKGWYYSHELGHLTSNAKLQAHWADKFIHLSDPAKAIAILQSDQTDIGHLVAPDGMRFPNRSINLDTELDDNAEQEQVSCEPTCSCGSFQRQLNNLSTFQEEIQGFKPWCIHLTWFAKYRELLCKRTEVRNASPSGTPEKCVAWWYAPPSDHNSDGRFLLLHTKSGAQAPLSHWRTYKPSEVFTQHHAWALFFNMMEAGYTPFPGTSLPQLKNAFKK*
Ga0099849_100339416	F058089	N/A	MKYHSDFNPMENQPEDQFTLLYEDGKRKVLHEFQCIVTDEVVDEFINFMRGVGHLELNIIERMHEVSRQYLELYHSNKEMFLELQQEELKEVD*
Ga0099849_10033945	F008128	N/A	MEPVYVPKLTVSFAVDLEVEYNSFGGKTADEIAEALQDDLDDLLFELGHVTGVCTSCTSIEFND*
Ga0099849_10033947	F025982	N/A	MNCHEHAIKDFDLQLEMNGLQMEMLMENNKVLDYHMAEYEDLEQKKLKLLIGKRFHQNASHAYWYYLQREKSGK*
Ga0099849_10033948	F001018	N/A	MSQITQAKLKDLSVIKLYEHYAALEKSLPLLTPESQELAQAELESCANLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEVSSDPEFWHSKERELYCVTEEVTTTKRVVLRSMSGEILDERIEPKSTTKVLPSLDAIRNAYQEGQQLPHGVKVLQEYSVRSKRIFAEPKLDLAPSEYPTELLREDSSAD*
Ga0099849_10033949	F013517	N/A	MFETLFVTVLPVFKDLLWAAAGMLLTYVLNKFQSQFN*