Scaffold Ga0099851_1000852

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1000852
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12814
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008798	Metagenome / Metatranscriptome	328	Y
F041742	Metagenome / Metatranscriptome	159	Y
F097252	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_100085217	F008798	N/A	MASEMQWTRDELVALYPDGTVNVQVDDDVHPMTTDEWSAWIDGQVGQKKPVDGEEAI*
Ga0099851_100085221	F041742	AGGTGG	MVTVTCNNNDCPNAGIDYNVLGTPPFVECGGCGVHLEPYDLRDDPPAPEPPVVS*
Ga0099851_10008523	F097252	AGG	MPTWLVVILAVLAPGGVITALIERTRRENNRDHAKNADLLHRIDGKVDKIDSRLDSHIDWHAHNDD*