Scaffold Ga0099851_1000567

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1000567
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15464
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (73.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F018913	Metagenome / Metatranscriptome	232	Y
F048261	Metagenome / Metatranscriptome	148	Y
F085690	Metagenome / Metatranscriptome	111	Y
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_100056731	F085690	N/A	MTYLITYYYKNDIEQRHQRHKTMAVAIATANLLIAHGDYVIDSITTEYGVEE*
Ga0099851_100056732	F000919	GGAG	MRFRNIEFRWSKCDNKYELVKWNEDPYGLNGFKPETCYVIAFFDKGKEGYDMRTIGNRFFEDKDAWVVGKYALEFLNAIFMIEQNELNYD*
Ga0099851_100056741	F048261	AGG	MSEPLNHKLDLSKIKTLTDVKNVFECMCLYSNASEEHEKYELHKEYFTIPNDPQELKLELPRKSLEEISQEFDEKIDKLIEDTKRKFYGCKIHTESRYERALDKIFDDFEYAKKHGQFPLKFTLDYSKLTATGSNITSNFVIKSGGEEVGYYTTGNGYLRFLMDKKPTAVVRFFMNKLLGFRWIDT*
Ga0099851_100056742	F090316	N/A	MPDDLQREEELFFKALEEYKEKKSQEPKDKTTNTLPAVIAAAL*
Ga0099851_100056744	F018913	N/A	MTNQQRAEELLKVFWESQAHNPAWLLQEILQHLRKQLSGQNPVNFNDELNIMYVLGYDECLKEIDAICDELELL*