Scaffold Ga0105020

Basic Information
Taxon OID	3300007514 Open in IMG/M
Scaffold ID	Ga0105020_1004959 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Genomics Facility

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15193
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15193

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)	Depth (m)	143
Location on Map

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Source Dataset Sampling Location

Location Name

Cariaco Basin, Venezuela

Coordinates

Lat. (^o)

10.5

Long. (^o)

-64.66

Alt. (m)

Depth (m)

143

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024655	Metagenome / Metatranscriptome	205	Y
F030560	Metagenome / Metatranscriptome	185	Y
F030879	Metagenome / Metatranscriptome	184	Y
F033758	Metagenome	176	N
F036431	Metagenome / Metatranscriptome	170	N
F074030	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_100495912	F030560	AGGAGG	MAQQTFSGVPASFTAGEVLSSADQNLLRDYLLAQIKEGQTTDTGEILPMIMDLTNNRIVLDTGGLEFSDGSLQTVAASSDPAEENLIVGLEMFL*
Ga0105020_100495922	F074030	GGA	MSKMTKLIAAVTGLLVALGTLVGTISMTIGKGPEPASGGITIVLNSPDAFEEFISNHPSNG*
Ga0105020_100495923	F033758	AGGGGG	MAARTLDDSTTGACYAPSLWDQTGGLVSDAHPLTSHRAATTVKSGTQKAQILLALRAVWPDRGLTGYDLSHRGLVVNGAGHPISANQACTRLLELRDAGLVDFAREFPAGPIVEAPTTPGNTGQVHTLTAYGVSKASAIPA*
Ga0105020_10049596	F030879	GGAGG	MPKKKHEYTVVGNHAIDGHEPGSTFLSDMSDEQAQQLIDGGHLTAGKRPEEG*
Ga0105020_10049598	F024655	GAGG	MKNSMKITLRVVHDGAERTLVAGPAAIVAFERHWGLGIGSAMAEIRVEHLAWLAHRAAWQEAQAGNGPAVKPFDAWLDQLDDIEAVGDEDDQDPLDGTP*
Ga0105020_10049599	F036431	N/A	MFGMDEFLRELRFAPNEVKKAVKQGSKEIADKVVVEMKQRARIVWHQEQYETIVPSLRAVQGTVPKVKVGGARKAAVGRRKRRPSAGELVMGAEFGGRREETTQQFPIHRGSKGYVLFPTIRKMHNFIKKEYTDQIEKVLRKVAR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105020_1004959

Overview

Ecosystem & Geography

Associated Families

Sequences