Scaffold Ga0105020_1003185

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1003185
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20005
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024655	Metagenome / Metatranscriptome	205	Y
F030879	Metagenome / Metatranscriptome	184	Y
F042378	Metagenome	158	Y
F074030	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_100318516	F074030	AGGCGG	MTKLIASITGLLVALGTLVGTVSMTIGKGPEPAPAGITIVLNSAEAFEDFLENHPSNG*
Ga0105020_100318521	F042378	GGA	MDIHQAINEVQQPRSRYQLVHFVIGQHDTPEMRFYQLCIELQDMGYKLRMARLAVRKATIEIGRLLATGDDLDAIEAEEKQVDLEQTEIVMRGAEREIAILTDLFNESQKFTRDEIEHAQPDYWKARLTRQTNLQVMSGHVQWAQLDSMRQIGLLDELVTDRENQLANGHQELPR*
Ga0105020_100318529	F024655	AGGGGG	MKNSMKIRLRVVHDGAERTLVAGPKAIYNFETSGAGVSIGQALAEVRVEHWARLAYQAALVEAQRGDGPPVKPFDAWIDGLEDIEVLAAEDDPVPLDGTP*
Ga0105020_100318531	F030879	GGAGG	MATKKNEYTVVGNHAVLGHEPGTTFSAALSAEQEQQLIDGGHLVAGKRPQEG*