Scaffold Ga0105020_1000532

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1000532
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54595
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (70.21%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004699	Metagenome / Metatranscriptome	427	Y
F005149	Metagenome / Metatranscriptome	410	Y
F007774	Metagenome / Metatranscriptome	345	Y
F023123	Metagenome	211	Y
F029128	Metagenome	189	N
F033843	Metagenome / Metatranscriptome	176	Y
F040143	Metagenome	162	Y
F040145	Metagenome	162	Y
F059066	Metagenome	134	Y
F103406	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_10005323	F004699	GGAG	MNGAIYALRIKLSDFINDKMESSVIDKINEINKVRTFKLQLWYDEGEVKVSDLKSFMEKYESLLHYKTTIKPNSSHDHAQFTWYNIIHKDDKDPKYPCRFQYEYESGWKAGGVLNGLEQFRDCLKFVTSPKPPKPEHQVKRKQKRNDYED*
Ga0105020_100053245	F007774	GAG	MSKKDKLTPEQEKELIMLSAEIEAEAIKMKMDYDKNPSEESGSVVYVNEQSSLLEDEDERLGDKALVSSSQILAKELKKQKKNGDKK*
Ga0105020_100053254	F040143	N/A	MWIKFKEKWIDPLVWIIIIIVLLLSDCTNAPNGAINIPYKEPIRYELIEPLGTKHLYKKEPIVGKYYYCLIHEVPEIIWEDNGVKKVRTYRGPKFR*
Ga0105020_100053255	F103406	GAGG	MFEKLIEKIMSVLQSIENDVSQEITKELKDIIDLLENSKCSNGMFCGMDKKW*
Ga0105020_100053256	F040145	N/A	MNKKEWLNEKVFVDMYGRNYNLSDVPMTYMLRKESFKKRKLSKDEINYLWKKNKKSMNG*
Ga0105020_100053261	F059066	N/A	MKIKNITEEEYNHYFHKWLYYYGGASDVVSLEQYIKDYDSDDYGDIDKYDTGLCPCVMCLDENIKE*
Ga0105020_100053267	F005149	AGGA	MRTKCLLCTAITEPGQGFYDHLEDVHMMPIRRVRIGENGRPREESHSECMERFKFNHEEYGTELCWCPDCIGGETLAMVNKVCSKHGQLYIKGKHKND*
Ga0105020_100053269	F033843	N/A	MVIRKTMYWIIGIFLFCGWADLVWGQTEKWSDESITLATTLTSLSVLDARQTFHMEEYRMYYDRIEPITYAHEVNPLMGKSPTKDRVVLVKVLSGTLTFYGLNKMKEKNRKKALTYLNVFYFMVVLHNASLGLRS*
Ga0105020_100053278	F023123	N/A	MDRNYFKEKRTGKKSKGSYTKCCGEVKDRHILNKKKPEEWKLIEQHCEDHLTRYSSVIDITPICCKVCGRLLKYVSKIDTDKDRHTSGDK*
Ga0105020_100053285	F029128	AGGAG	MKDKIIQIVMMIIIGVGGFYGGIYYGVMKTDVYMENLMEEFEQISDDVDAFVKVSDPKTIRAYVKELNKILDDIEFLHNIIESGQLADEAITDFFNAHQNKLDELNDRVVVLALETQGMLSEMSGEVKSELSANKTELENTLKSESDSVRKEIGKLYDKTDELYKELEQVSKLLDKAKETLIGKQVFK*