NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F103406

Metagenome / Metatranscriptome Family F103406

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F103406
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 52 residues
Representative Sequence MFEELIDRLTAILLSIEDDVSSEIIIELEDIINSLENSKCSNGMFCGMDKKW
Number of Associated Samples 72
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 83.17 %
% of genes near scaffold ends (potentially truncated) 21.78 %
% of genes from short scaffolds (< 2000 bps) 80.20 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (58.416 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(50.495 % of family members)
Environment Ontology (ENVO) Unclassified
(95.050 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(88.119 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 38.75%    β-sheet: 2.50%    Coil/Unstructured: 58.75%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.58
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF03819MazG 26.73
PF05406WGR 13.86
PF01182Glucosamine_iso 2.97
PF02585PIG-L 1.98
PF00557Peptidase_M24 1.98
PF13392HNH_3 1.98
PF01713Smr 1.98
PF13186SPASM 0.99
PF03102NeuB 0.99
PF01555N6_N4_Mtase 0.99
PF07661MORN_2 0.99
PF01871AMMECR1 0.99
PF04055Radical_SAM 0.99
PF02229PC4 0.99
PF01531Glyco_transf_11 0.99
PF13578Methyltransf_24 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG3831WGR domain, predicted DNA-binding domain in MolRTranscription [K] 13.86
COG03636-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminaseCarbohydrate transport and metabolism [G] 2.97
COG2120N-acetylglucosaminyl deacetylase, LmbE familyCarbohydrate transport and metabolism [G] 1.98
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.99
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.99
COG2078Predicted RNA modification protein, AMMECR1 domainGeneral function prediction only [R] 0.99
COG2089Sialic acid synthase SpsE, contains C-terminal SAF domainCell wall/membrane/envelope biogenesis [M] 0.99
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.99
COG2849Antitoxin component YwqK of the YwqJK toxin-antitoxin moduleDefense mechanisms [V] 0.99


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A58.42 %
All OrganismsrootAll Organisms41.58 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000157|LPaug08P261000mDRAFT_c1009538All Organisms → Viruses → Predicted Viral1569Open in IMG/M
3300000179|LPjun09P16500mDRAFT_c1053781Not Available518Open in IMG/M
3300000222|LPjun09P12500mDRAFT_1074687Not Available521Open in IMG/M
3300002484|JGI25129J35166_1010544All Organisms → Viruses → Predicted Viral2377Open in IMG/M
3300002484|JGI25129J35166_1083657Not Available573Open in IMG/M
3300002511|JGI25131J35506_1001169All Organisms → Viruses → Predicted Viral4086Open in IMG/M
3300002514|JGI25133J35611_10059930All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus1240Open in IMG/M
3300002518|JGI25134J35505_10027180All Organisms → Viruses → Predicted Viral1660Open in IMG/M
3300003702|PicMicro_10036585All Organisms → cellular organisms → Bacteria3212Open in IMG/M
3300005400|Ga0066867_10194569All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium744Open in IMG/M
3300005402|Ga0066855_10024088Not Available1767Open in IMG/M
3300005402|Ga0066855_10098917All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales915Open in IMG/M
3300005402|Ga0066855_10290894Not Available537Open in IMG/M
3300005408|Ga0066848_10123630Not Available701Open in IMG/M
3300005425|Ga0066859_10071404All Organisms → cellular organisms → Bacteria1050Open in IMG/M
3300005427|Ga0066851_10031229All Organisms → Viruses → Predicted Viral1896Open in IMG/M
3300005428|Ga0066863_10023461All Organisms → Viruses → Predicted Viral2406Open in IMG/M
3300005431|Ga0066854_10040844All Organisms → Viruses → Predicted Viral1531Open in IMG/M
3300005431|Ga0066854_10049936All Organisms → Viruses → Predicted Viral1384Open in IMG/M
3300005431|Ga0066854_10193395Not Available686Open in IMG/M
3300005508|Ga0066868_10034946All Organisms → Viruses → Predicted Viral1618Open in IMG/M
3300005514|Ga0066866_10078343All Organisms → Viruses → Predicted Viral1225Open in IMG/M
3300005567|Ga0066844_10070697Not Available591Open in IMG/M
3300005603|Ga0066853_10269951Not Available559Open in IMG/M
3300005658|Ga0066842_10054614Not Available727Open in IMG/M
3300005945|Ga0066381_10132160Not Available712Open in IMG/M
3300006002|Ga0066368_10011334Not Available3140Open in IMG/M
3300006019|Ga0066375_10017596All Organisms → Viruses → Predicted Viral2635Open in IMG/M
3300006019|Ga0066375_10059095All Organisms → Viruses → Predicted Viral1270Open in IMG/M
3300006091|Ga0082018_1018860Not Available1242Open in IMG/M
3300006310|Ga0068471_1336579Not Available1243Open in IMG/M
3300006325|Ga0068501_1260572Not Available655Open in IMG/M
3300006330|Ga0068483_1232946Not Available569Open in IMG/M
3300006338|Ga0068482_1145377Not Available5632Open in IMG/M
3300006338|Ga0068482_1279197All Organisms → Viruses → Predicted Viral1191Open in IMG/M
3300006339|Ga0068481_1217863All Organisms → Viruses → Predicted Viral1489Open in IMG/M
3300006736|Ga0098033_1006996All Organisms → cellular organisms → Bacteria3788Open in IMG/M
3300006736|Ga0098033_1023040Not Available1921Open in IMG/M
3300006738|Ga0098035_1087103All Organisms → Viruses → Predicted Viral1099Open in IMG/M
3300006750|Ga0098058_1050386Not Available1175Open in IMG/M
3300006750|Ga0098058_1084840All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300006750|Ga0098058_1148543All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes620Open in IMG/M
3300006900|Ga0066376_10291909Not Available954Open in IMG/M
3300007514|Ga0105020_1000532Not Available54595Open in IMG/M
3300007758|Ga0105668_1085938Not Available758Open in IMG/M
3300008216|Ga0114898_1122057Not Available765Open in IMG/M
3300008629|Ga0115658_1129144All Organisms → Viruses → Predicted Viral1342Open in IMG/M
3300009605|Ga0114906_1261552Not Available560Open in IMG/M
3300012950|Ga0163108_10321654Not Available996Open in IMG/M
3300017702|Ga0181374_1032842Not Available905Open in IMG/M
3300017775|Ga0181432_1003247All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium3649Open in IMG/M
3300017775|Ga0181432_1049046All Organisms → cellular organisms → Bacteria1179Open in IMG/M
3300017775|Ga0181432_1061058Not Available1072Open in IMG/M
3300017775|Ga0181432_1113100Not Available816Open in IMG/M
3300017775|Ga0181432_1115364Not Available809Open in IMG/M
3300017775|Ga0181432_1215899Not Available602Open in IMG/M
3300020375|Ga0211656_10116196Not Available827Open in IMG/M
3300020407|Ga0211575_10174245Not Available896Open in IMG/M
3300020427|Ga0211603_10215637Not Available721Open in IMG/M
3300020427|Ga0211603_10297564Not Available615Open in IMG/M
3300020435|Ga0211639_10481074Not Available510Open in IMG/M
3300021442|Ga0206685_10192699Not Available685Open in IMG/M
3300022225|Ga0187833_10162672All Organisms → Viruses → Predicted Viral1348Open in IMG/M
3300022225|Ga0187833_10228752Not Available1073Open in IMG/M
3300022225|Ga0187833_10432908Not Available691Open in IMG/M
3300022227|Ga0187827_10097227All Organisms → Viruses → Predicted Viral2189Open in IMG/M
3300025046|Ga0207902_1044146Not Available556Open in IMG/M
3300025072|Ga0208920_1001396Not Available6128Open in IMG/M
3300025125|Ga0209644_1078734Not Available771Open in IMG/M
3300025125|Ga0209644_1150165Not Available555Open in IMG/M
3300025131|Ga0209128_1144443Not Available718Open in IMG/M
3300025133|Ga0208299_1209195Not Available573Open in IMG/M
3300025141|Ga0209756_1096647Not Available1284Open in IMG/M
3300025265|Ga0208467_1010233Not Available1953Open in IMG/M
3300025268|Ga0207894_1073151Not Available585Open in IMG/M
3300025873|Ga0209757_10163563Not Available700Open in IMG/M
3300026080|Ga0207963_1027807All Organisms → Viruses → Predicted Viral1736Open in IMG/M
3300026087|Ga0208113_1007341All Organisms → Viruses → Predicted Viral4163Open in IMG/M
3300026193|Ga0208129_1035232Not Available1119Open in IMG/M
3300026193|Ga0208129_1117476Not Available512Open in IMG/M
3300026213|Ga0208131_1047476Not Available1062Open in IMG/M
3300026254|Ga0208522_1027881All Organisms → Viruses → Predicted Viral2086Open in IMG/M
3300026262|Ga0207990_1034409All Organisms → Viruses → Predicted Viral1489Open in IMG/M
3300026269|Ga0208766_1143524All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon623Open in IMG/M
3300027685|Ga0209554_1101409Not Available942Open in IMG/M
3300028190|Ga0257108_1008678All Organisms → Viruses → Predicted Viral2964Open in IMG/M
3300028190|Ga0257108_1047838All Organisms → Viruses → Predicted Viral1286Open in IMG/M
3300028190|Ga0257108_1059427All Organisms → Viruses → Predicted Viral1146Open in IMG/M
3300028190|Ga0257108_1077177Not Available993Open in IMG/M
3300028190|Ga0257108_1096839All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium874Open in IMG/M
3300028192|Ga0257107_1046715Not Available1341Open in IMG/M
3300031801|Ga0310121_10059616All Organisms → Viruses → Predicted Viral2540Open in IMG/M
3300031801|Ga0310121_10155600All Organisms → Viruses → Predicted Viral1421Open in IMG/M
3300032048|Ga0315329_10017372All Organisms → Viruses → Predicted Viral3256Open in IMG/M
3300032048|Ga0315329_10585569Not Available592Open in IMG/M
3300032138|Ga0315338_1024415Not Available2743Open in IMG/M
3300032278|Ga0310345_10035272All Organisms → Viruses → Predicted Viral4221Open in IMG/M
3300032278|Ga0310345_10146477All Organisms → Viruses → Predicted Viral2104Open in IMG/M
3300032278|Ga0310345_10374934Not Available1336Open in IMG/M
3300032278|Ga0310345_11169864Not Available752Open in IMG/M
3300032820|Ga0310342_100251943Not Available1832Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine50.50%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater8.91%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine7.92%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine7.92%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater5.94%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine4.95%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean3.96%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.96%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.98%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.99%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater0.99%
Background SeawaterEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater0.99%
Marine, Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume0.99%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000157Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 1000mEnvironmentalOpen in IMG/M
3300000179Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 500mEnvironmentalOpen in IMG/M
3300000222Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 500mEnvironmentalOpen in IMG/M
3300002484Marine viral communities from the Pacific Ocean - ETNP_2_130EnvironmentalOpen in IMG/M
3300002511Marine viral communities from the Pacific Ocean - ETNP_2_1000EnvironmentalOpen in IMG/M
3300002514Marine viral communities from the Pacific Ocean - ETNP_6_85EnvironmentalOpen in IMG/M
3300002518Marine viral communities from the Pacific Ocean - ETNP_6_100EnvironmentalOpen in IMG/M
3300003702Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial AssemblyEnvironmentalOpen in IMG/M
3300005400Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261EnvironmentalOpen in IMG/M
3300005402Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73EnvironmentalOpen in IMG/M
3300005408Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV72EnvironmentalOpen in IMG/M
3300005425Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199EnvironmentalOpen in IMG/M
3300005427Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65EnvironmentalOpen in IMG/M
3300005428Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253EnvironmentalOpen in IMG/M
3300005431Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75EnvironmentalOpen in IMG/M
3300005508Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259EnvironmentalOpen in IMG/M
3300005514Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263EnvironmentalOpen in IMG/M
3300005567Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF82AEnvironmentalOpen in IMG/M
3300005603Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61EnvironmentalOpen in IMG/M
3300005658Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF86AEnvironmentalOpen in IMG/M
3300005945Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_AAIW_ad_876m_LV_BEnvironmentalOpen in IMG/M
3300006002Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_AEnvironmentalOpen in IMG/M
3300006019Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_AEnvironmentalOpen in IMG/M
3300006091Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125EnvironmentalOpen in IMG/M
3300006310Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500mEnvironmentalOpen in IMG/M
3300006325Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500mEnvironmentalOpen in IMG/M
3300006330Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_1000mEnvironmentalOpen in IMG/M
3300006338Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770mEnvironmentalOpen in IMG/M
3300006339Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500mEnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300007514Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300007758Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300008216Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_GeostarEnvironmentalOpen in IMG/M
3300008629Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2umEnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300012950Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaGEnvironmentalOpen in IMG/M
3300017702Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaGEnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300020375Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)EnvironmentalOpen in IMG/M
3300020407Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)EnvironmentalOpen in IMG/M
3300020427Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)EnvironmentalOpen in IMG/M
3300020435Marine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300022225Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300025046Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)EnvironmentalOpen in IMG/M
3300025072Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025131Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025265Marine microbial communities from the Deep Pacific Ocean - MP2098 (SPAdes)EnvironmentalOpen in IMG/M
3300025268Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300026080Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026087Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026193Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47B (SPAdes)EnvironmentalOpen in IMG/M
3300026213Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes)EnvironmentalOpen in IMG/M
3300026254Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 (SPAdes)EnvironmentalOpen in IMG/M
3300026262Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75 (SPAdes)EnvironmentalOpen in IMG/M
3300026269Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263 (SPAdes)EnvironmentalOpen in IMG/M
3300027685Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300028190Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000mEnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300031801Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986EnvironmentalOpen in IMG/M
3300032048Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315EnvironmentalOpen in IMG/M
3300032138Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
LPaug08P261000mDRAFT_100953853300000157MarineMFEELINKLTAILLAIEDDVSSEVIQELEDIIESLEESKCSNDMFCGMDKKF*
LPjun09P16500mDRAFT_105378123300000179MarineMFEELLNRLTAILLSIEDDVSSDVIIELEDIINSIENSKCKNDMFCGMDKKW*
LPjun09P12500mDRAFT_107468733300000222MarineMFEELLNRLTAILLSIEDDVSSDVIQELEDVIQSLEESKCSNG
JGI25129J35166_101054413300002484MarineILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW*
JGI25129J35166_108365733300002484MarineEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW*
JGI25131J35506_100116983300002511MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCGMDKKW*
JGI25133J35611_1005993043300002514MarineMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMEKKW*
JGI25134J35505_1002718013300002518MarineMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW*
PicMicro_1003658543300003702Marine, Hydrothermal Vent PlumeMFKKLIEKLMFILQSIENDVSPEIVLELKDIINSIGNSKCSNDMFCGMDKKW*
Ga0066867_1019456923300005400MarineMFEELIGRLTDILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW*
Ga0066855_1002408823300005402MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCKNDMFCGMDKKW*
Ga0066855_1009891713300005402MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCGMDKKF*
Ga0066855_1029089423300005402MarineAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCGMDKKW*
Ga0066848_1012363023300005408MarineMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW*
Ga0066859_1007140433300005425MarineVFEELIKKLTAILLSIEDVVPSEVIIELEDIIRSLEESKCSNDMFCGMDKKF*
Ga0066851_1003122923300005427MarineMFEELIDRLTAILQEIEQNASNEKELVSKLEDIIDSLKNSKCSNGMFCGMDKKF*
Ga0066863_1002346173300005428MarineLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW*
Ga0066854_1004084413300005431MarineMFEELIERLMSILRDIENDASPEIVSELKDIINSLGNSECKNGMFCGMDKKWL*
Ga0066854_1004993633300005431MarineMFEELLNRLTAILLSIENDVTSDIIIELEDIINSLENSKCSNDMFCGMDKKW*
Ga0066854_1019339513300005431MarineGYRIMFEELLNRLTAILLSIEDDVSSEIVIELEDIINSLENSKCKNDMFCGMDKKW*
Ga0066868_1003494623300005508MarineMFEELIGRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMF*
Ga0066866_1007834333300005514MarineMFEELIDRLTVILQEIEQNASNEKELVSKLEDIIDSLKNSKCSNGMFCGMDKKF*
Ga0066844_1007069723300005567MarineMFEELMNKLSAILLSIEDVVPSDVIIELENIIQSLEESKCSNDMFCGMDKKF*
Ga0066853_1026995113300005603MarineMFEELLNRLTAILLSIEDDVSSEIIIELEDIINSLENSKCKNGMFCGMDKKW*
Ga0066842_1005461423300005658MarineVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW*
Ga0066381_1013216023300005945MarineMFEELMNKLTAILLSIEDVVPSDVIIELENIIQSLEESKCSNDMFCGMDKKF*
Ga0066368_1001133473300006002MarineMFEELLNRLTAILLSIEDDVSSEIVIELENIINSLENSKCSNNMFCGMDKKW*
Ga0066375_1001759613300006019MarineMFEELLNRLTAILLSIEDDVSSEVVIELEDIINSIENSKCKNDMFCGMDKKW*
Ga0066375_1005909543300006019MarineMFEKLIKKLMSILQSVENDVSQEIVSELKDIINSLENSKCSNDMFCGMDKKW*
Ga0082018_101886033300006091MarineMFEELLNRLTAILLSIEDDVSSEIIIELEDIINSLENSKCKNDMFCGMDKKW*
Ga0068471_133657913300006310MarineMFEELLNRLTAILLSIEDDVSSDVIRELEDVIQSLEESKCSN
Ga0068501_126057213300006325MarineMFEELLNRLTAILLSIEDDVPSDVVIELEDIINSIENSKCKNDMFCGMDKKW*
Ga0068483_123294623300006330MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCG
Ga0068482_114537743300006338MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSLENSKCKNDMFCGMDKKW*
Ga0068482_127919733300006338MarineMFEELIGRLKSILREIEQNAPNEKVVILELKDIIDSLENSKCSNDMFCGMDKKF*
Ga0068481_121786333300006339MarineMFEQLIDRLKAILREIEQYASGEYIVIEELKDIINSLENSKCSNDMFCGMDKKF*
Ga0098033_100699643300006736MarineMFEKLIEKIMAVLQSIENDVSQEITKELKDIIDLLENSKCSNGMFCGMDKKW*
Ga0098033_102304043300006736MarineMFEELIDRLTAILLSIEDDVSSEIIIELEDIINSLENSKCKNDMFCGMDKKW*
Ga0098035_108710353300006738MarineVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW*
Ga0098058_105038623300006750MarineMFEELIDRLTAILLSIEDDVSSEIIIELEDIINSLENSKCSNGMFCGMDKKW*
Ga0098058_108484013300006750MarineEKIMAVLQSIENDVSQEITKELKDIIDLLENSKCSNGMFCGMDKKW*
Ga0098058_114854323300006750MarineVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKF*
Ga0066376_1029190943300006900MarineMFEELIEKLMSILQGIENNVSQEIVSELKDIINSLENSKCSNDMFCGMDKKW*
Ga0105020_1000532553300007514MarineMFEKLIEKIMSVLQSIENDVSQEITKELKDIIDLLENSKCSNGMFCGMDKKW*
Ga0105668_108593823300007758Background SeawaterMFEELMNKLTAILLAIEDDVSSEVIQELEDIIQSLEESKCSNDMFCGMDKKW*
Ga0114898_112205733300008216Deep OceanELIDRLKSILREIEQYASGEYVVIEELKDIINSLENSKCSNDMFCGMDKKW*
Ga0115658_112914433300008629MarineMFEKLIEKIMSVLQSIENDVSQEIVQELKDIINLLENSKCSNDMFCGMDKKW*
Ga0114906_126155213300009605Deep OceanMFKELIDRLKSILREIEQYASGEYVMIEELKDIINSLENSKCSNDMFCGMDKKW*
Ga0163108_1032165423300012950SeawaterVFEEQIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW*
Ga0181374_103284233300017702MarineKVIIVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0181432_100324723300017775SeawaterMFEELMNKLTAILLAIEDDVSSDVIQELEDIIESLEESKCSNDMFCGMDKKF
Ga0181432_104904623300017775SeawaterMFEELLNRLTAILLSIEDDVSSDVIRELEDVIQSLEESKCSNGMFCGMDKKW
Ga0181432_106105843300017775SeawaterYRIMFEELLNKLTAILLSIEDDVSSEIVIELEDIINSLENSKCKNDMFCGMDKKW
Ga0181432_111310033300017775SeawaterMFEELIGRLTAILREIEQNASNEKEVISELEDVIYSLKNSKCKNDMFCGMDKKW
Ga0181432_111536413300017775SeawaterMFEQLIDRLKAILREIEQYASGEYIVIEELKDIINSLENSKCSNDMFCGMDKKW
Ga0181432_121589913300017775SeawaterLLNRLTAILLSIENDVTSDIIIELEDIINSLENSKCKNDMFCGMDKKW
Ga0211656_1011619633300020375MarineMFEELLNRLTAILLSIEDDVSSDVIIELENIIRSLEESKCSNDMFCGMDKKF
Ga0211575_1017424533300020407MarineMFEKLIEKITDILLTIEDDVSIEIIQELESIIKSLENSKCKNDMFCGMDKKW
Ga0211603_1021563713300020427MarineMFEKLIEKIMSVLQSIENDVSQEITKELRDIIDLLENSKCSNGMFCGMDKKW
Ga0211603_1029756433300020427MarineMFEELIGRLEAILREIEQNASNEKEVISELEDIINSLENSKCKNDMFCGMDKKW
Ga0211639_1048107423300020435MarineMFEELMNKLSAILLSIEDVVPSDVIIELENIIRSLEESKCSNDMFCGMDKKF
Ga0206685_1019269913300021442SeawaterMFEKLIEKITDILLTIEDDVSIEIIQELESIIKSLENSKCKNDMFCG
Ga0187833_1016267223300022225SeawaterMFEKLIEKIMAVLQSIENDVSQEITKELKDIIDLLENSKCSNGMFCGMDKKW
Ga0187833_1022875213300022225SeawaterVFEELIKKLTAILLSIEDVVPSEVIIELEDIIRSLEESKCSNDMFCGMDKKF
Ga0187833_1043290833300022225SeawaterMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW
Ga0187827_1009722713300022227SeawaterVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0207902_104414633300025046MarineLLSIEDDVSSEVIQELEDIIQSLEKSKCSNGMFCGMDKKW
Ga0208920_100139623300025072MarineVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW
Ga0209644_107873423300025125MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCGMDKKW
Ga0209644_115016523300025125MarineMFEELMNKLTAILLSIEDVVPSDVIIELENIIQSLEESKCSNDMFCGMDKKF
Ga0209128_114444323300025131MarineVFEELIKKLTAILLSIEDVVPSEVIIELEDIIRSLEESKCSNDMFCGMDKKW
Ga0208299_120919513300025133MarineMFEELIDRLTAILQEIEQNASNEKELVSKLEDIIDSLKNSKCSNGMFCGMDKKF
Ga0209756_109664733300025141MarineMFEELIDRLTAILLSIEDDVSSEIIIELEDIINSLENSKCSNGMFCGMDKKW
Ga0208467_101023333300025265Deep OceanDILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW
Ga0207894_107315113300025268Deep OceanMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDK
Ga0209757_1016356323300025873MarineMFEELLNRLTAILLSIENDVTSDIIIELEDIINSLENSKCSNDMFCGMDKKW
Ga0207963_102780733300026080MarineMFEELLNRLTAILLSIEDDVSSEVVIELEDIINSIENSKCKNDMFCGMDKKW
Ga0208113_100734193300026087MarineMFEELLNRLTAILLSIEDDVSSEIVIELENIINSLENSKCSNNMFCGMDKKW
Ga0208129_103523253300026193MarineRIMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0208129_111747623300026193MarineRIMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW
Ga0208131_104747623300026213MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCGMDKKF
Ga0208522_102788113300026254MarineIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0207990_103440943300026262MarineMFEELIERLMSILRDIENDASPEIVSELKDIINSLGNSECKNGMFCGMDKKWL
Ga0208766_114352413300026269MarineMFEELIDRLTVILQEIEQNASNEKELVSKLEDIIDSLKNSKCSNGMFCGMDKKF
Ga0209554_110140913300027685MarineMFEELIEKLMSILQGIENNVSQEIVSELKDIINSLENSKCSNDMFCGMDKKF
Ga0257108_100867853300028190MarineMFEELINKLTAILLAIEDDVSSEVIQELEDIIESLEESKCSNDMFCGMDKKF
Ga0257108_104783833300028190MarineMFEELMNKLTAILLAIEDDVSSEVIQELEDIIQSLEESKCSNDMFCGMDKKF
Ga0257108_105942733300028190MarineMFEELLNRLTAILLSIEDDVSSDVIIELEDIINSIENSKCKNDMFCGMDKKW
Ga0257108_107717723300028190MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCKNDMFCGMDKKW
Ga0257108_109683923300028190MarineMFEELIKKLTSILRDIESESIRFHVPEIVSELKDIINSLEKSKCSNDMFCGMDKKW
Ga0257107_104671533300028192MarineMFEELLNRLTAILLSIEDDVSSDVIQELEDVIQSLEESKCSNGMFCGMDKKW
Ga0310121_1005961653300031801MarineMFEELLNKLTAILLSIEDDVSSDVIRELEDVIQSLEESKCSNGMFCGMDKKW
Ga0310121_1015560023300031801MarineMFEELLNRLTAILLSIEDDVPSDVVIELEDIINSIENSKCSNDMFCGMDKKW
Ga0315329_1001737263300032048SeawaterMFEELIKKLTSILQDIESESIRFHVPEIVSELKDIINSLEKSKCSNDMFCGMDKKW
Ga0315329_1058556913300032048SeawaterMFDELIERLKAILQEIEQNASNEKEVVSELEDIIDSLKN
Ga0315338_102441533300032138SeawaterMFDELIERLKAILQEIEQNASNEKEVVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0310345_1003527223300032278SeawaterMFEELLNRLTAILLSIEDDVPSDVVIELEDIINSIENSKCKNDMFCGMDKKW
Ga0310345_1014647743300032278SeawaterMFEQLIDRLKAILREIEQYASGEYIVIEELKDIINSLENSKCSNDMFCGMDKKF
Ga0310345_1037493413300032278SeawaterKIINTYIKRGYVIMFDELIERLKAILQEIEQNASNEKEVVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0310345_1116986423300032278SeawaterMFEKLLNRLTAILLSIENDVTSDIIIELEDIINSLENSKCSNDMFCGMDKKW
Ga0310342_10025194363300032820SeawaterMFDELIERLKAILQEIEQNVSNEKEVVSELEDIIDSLKNSKCSNDMFCGMDKKW


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.