NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103406

Metagenome / Metatranscriptome Family F103406

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103406
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 52 residues
Representative Sequence MFEELIDRLTAILLSIEDDVSSEIIIELEDIINSLENSKCSNGMFCGMDKKW
Number of Associated Samples 72
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 83.17 %
% of genes near scaffold ends (potentially truncated) 21.78 %
% of genes from short scaffolds (< 2000 bps) 80.20 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.416 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(50.495 % of family members)
Environment Ontology (ENVO) Unclassified
(95.050 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(88.119 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72
1LPaug08P261000mDRAFT_10095385
2LPjun09P16500mDRAFT_10537812
3LPjun09P12500mDRAFT_10746873
4JGI25129J35166_10105441
5JGI25129J35166_10836573
6JGI25131J35506_10011698
7JGI25133J35611_100599304
8JGI25134J35505_100271801
9PicMicro_100365854
10Ga0066867_101945692
11Ga0066855_100240882
12Ga0066855_100989171
13Ga0066855_102908942
14Ga0066848_101236302
15Ga0066859_100714043
16Ga0066851_100312292
17Ga0066863_100234617
18Ga0066854_100408441
19Ga0066854_100499363
20Ga0066854_101933951
21Ga0066868_100349462
22Ga0066866_100783433
23Ga0066844_100706972
24Ga0066853_102699511
25Ga0066842_100546142
26Ga0066381_101321602
27Ga0066368_100113347
28Ga0066375_100175961
29Ga0066375_100590954
30Ga0082018_10188603
31Ga0068471_13365791
32Ga0068501_12605721
33Ga0068483_12329462
34Ga0068482_11453774
35Ga0068482_12791973
36Ga0068481_12178633
37Ga0098033_10069964
38Ga0098033_10230404
39Ga0098035_10871035
40Ga0098058_10503862
41Ga0098058_10848401
42Ga0098058_11485432
43Ga0066376_102919094
44Ga0105020_100053255
45Ga0105668_10859382
46Ga0114898_11220573
47Ga0115658_11291443
48Ga0114906_12615521
49Ga0163108_103216542
50Ga0181374_10328423
51Ga0181432_10032472
52Ga0181432_10490462
53Ga0181432_10610584
54Ga0181432_11131003
55Ga0181432_11153641
56Ga0181432_12158991
57Ga0211656_101161963
58Ga0211575_101742453
59Ga0211603_102156371
60Ga0211603_102975643
61Ga0211639_104810742
62Ga0206685_101926991
63Ga0187833_101626722
64Ga0187833_102287521
65Ga0187833_104329083
66Ga0187827_100972271
67Ga0207902_10441463
68Ga0208920_10013962
69Ga0209644_10787342
70Ga0209644_11501652
71Ga0209128_11444432
72Ga0208299_12091951
73Ga0209756_10966473
74Ga0208467_10102333
75Ga0207894_10731511
76Ga0209757_101635632
77Ga0207963_10278073
78Ga0208113_10073419
79Ga0208129_10352325
80Ga0208129_11174762
81Ga0208131_10474762
82Ga0208522_10278811
83Ga0207990_10344094
84Ga0208766_11435241
85Ga0209554_11014091
86Ga0257108_10086785
87Ga0257108_10478383
88Ga0257108_10594273
89Ga0257108_10771772
90Ga0257108_10968392
91Ga0257107_10467153
92Ga0310121_100596165
93Ga0310121_101556002
94Ga0315329_100173726
95Ga0315329_105855691
96Ga0315338_10244153
97Ga0310345_100352722
98Ga0310345_101464774
99Ga0310345_103749341
100Ga0310345_111698642
101Ga0310342_1002519436
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 38.75%    β-sheet: 2.50%    Coil/Unstructured: 58.75%
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Variant

5101520253035404550MFEELIDRLTAILLSIEDDVSSEIIIELEDIINSLENSKCSNGMFCGMDKKWSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

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All Organisms
Unclassified
41.6%58.4%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Marine
Deep Ocean
Seawater
Marine
Marine
Seawater
Marine
Background Seawater
Marine
Seawater
Marine
Marine, Hydrothermal Vent Plume
Seawater
50.5%4.0%8.9%7.9%7.9%4.0%5.0%5.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
LPaug08P261000mDRAFT_100953853300000157MarineMFEELINKLTAILLAIEDDVSSEVIQELEDIIESLEESKCSNDMFCGMDKKF*
LPjun09P16500mDRAFT_105378123300000179MarineMFEELLNRLTAILLSIEDDVSSDVIIELEDIINSIENSKCKNDMFCGMDKKW*
LPjun09P12500mDRAFT_107468733300000222MarineMFEELLNRLTAILLSIEDDVSSDVIQELEDVIQSLEESKCSNG
JGI25129J35166_101054413300002484MarineILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW*
JGI25129J35166_108365733300002484MarineEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW*
JGI25131J35506_100116983300002511MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCGMDKKW*
JGI25133J35611_1005993043300002514MarineMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMEKKW*
JGI25134J35505_1002718013300002518MarineMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW*
PicMicro_1003658543300003702Marine, Hydrothermal Vent PlumeMFKKLIEKLMFILQSIENDVSPEIVLELKDIINSIGNSKCSNDMFCGMDKKW*
Ga0066867_1019456923300005400MarineMFEELIGRLTDILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW*
Ga0066855_1002408823300005402MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCKNDMFCGMDKKW*
Ga0066855_1009891713300005402MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCGMDKKF*
Ga0066855_1029089423300005402MarineAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCGMDKKW*
Ga0066848_1012363023300005408MarineMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW*
Ga0066859_1007140433300005425MarineVFEELIKKLTAILLSIEDVVPSEVIIELEDIIRSLEESKCSNDMFCGMDKKF*
Ga0066851_1003122923300005427MarineMFEELIDRLTAILQEIEQNASNEKELVSKLEDIIDSLKNSKCSNGMFCGMDKKF*
Ga0066863_1002346173300005428MarineLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW*
Ga0066854_1004084413300005431MarineMFEELIERLMSILRDIENDASPEIVSELKDIINSLGNSECKNGMFCGMDKKWL*
Ga0066854_1004993633300005431MarineMFEELLNRLTAILLSIENDVTSDIIIELEDIINSLENSKCSNDMFCGMDKKW*
Ga0066854_1019339513300005431MarineGYRIMFEELLNRLTAILLSIEDDVSSEIVIELEDIINSLENSKCKNDMFCGMDKKW*
Ga0066868_1003494623300005508MarineMFEELIGRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMF*
Ga0066866_1007834333300005514MarineMFEELIDRLTVILQEIEQNASNEKELVSKLEDIIDSLKNSKCSNGMFCGMDKKF*
Ga0066844_1007069723300005567MarineMFEELMNKLSAILLSIEDVVPSDVIIELENIIQSLEESKCSNDMFCGMDKKF*
Ga0066853_1026995113300005603MarineMFEELLNRLTAILLSIEDDVSSEIIIELEDIINSLENSKCKNGMFCGMDKKW*
Ga0066842_1005461423300005658MarineVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW*
Ga0066381_1013216023300005945MarineMFEELMNKLTAILLSIEDVVPSDVIIELENIIQSLEESKCSNDMFCGMDKKF*
Ga0066368_1001133473300006002MarineMFEELLNRLTAILLSIEDDVSSEIVIELENIINSLENSKCSNNMFCGMDKKW*
Ga0066375_1001759613300006019MarineMFEELLNRLTAILLSIEDDVSSEVVIELEDIINSIENSKCKNDMFCGMDKKW*
Ga0066375_1005909543300006019MarineMFEKLIKKLMSILQSVENDVSQEIVSELKDIINSLENSKCSNDMFCGMDKKW*
Ga0082018_101886033300006091MarineMFEELLNRLTAILLSIEDDVSSEIIIELEDIINSLENSKCKNDMFCGMDKKW*
Ga0068471_133657913300006310MarineMFEELLNRLTAILLSIEDDVSSDVIRELEDVIQSLEESKCSN
Ga0068501_126057213300006325MarineMFEELLNRLTAILLSIEDDVPSDVVIELEDIINSIENSKCKNDMFCGMDKKW*
Ga0068483_123294623300006330MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCG
Ga0068482_114537743300006338MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSLENSKCKNDMFCGMDKKW*
Ga0068482_127919733300006338MarineMFEELIGRLKSILREIEQNAPNEKVVILELKDIIDSLENSKCSNDMFCGMDKKF*
Ga0068481_121786333300006339MarineMFEQLIDRLKAILREIEQYASGEYIVIEELKDIINSLENSKCSNDMFCGMDKKF*
Ga0098033_100699643300006736MarineMFEKLIEKIMAVLQSIENDVSQEITKELKDIIDLLENSKCSNGMFCGMDKKW*
Ga0098033_102304043300006736MarineMFEELIDRLTAILLSIEDDVSSEIIIELEDIINSLENSKCKNDMFCGMDKKW*
Ga0098035_108710353300006738MarineVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW*
Ga0098058_105038623300006750MarineMFEELIDRLTAILLSIEDDVSSEIIIELEDIINSLENSKCSNGMFCGMDKKW*
Ga0098058_108484013300006750MarineEKIMAVLQSIENDVSQEITKELKDIIDLLENSKCSNGMFCGMDKKW*
Ga0098058_114854323300006750MarineVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKF*
Ga0066376_1029190943300006900MarineMFEELIEKLMSILQGIENNVSQEIVSELKDIINSLENSKCSNDMFCGMDKKW*
Ga0105020_1000532553300007514MarineMFEKLIEKIMSVLQSIENDVSQEITKELKDIIDLLENSKCSNGMFCGMDKKW*
Ga0105668_108593823300007758Background SeawaterMFEELMNKLTAILLAIEDDVSSEVIQELEDIIQSLEESKCSNDMFCGMDKKW*
Ga0114898_112205733300008216Deep OceanELIDRLKSILREIEQYASGEYVVIEELKDIINSLENSKCSNDMFCGMDKKW*
Ga0115658_112914433300008629MarineMFEKLIEKIMSVLQSIENDVSQEIVQELKDIINLLENSKCSNDMFCGMDKKW*
Ga0114906_126155213300009605Deep OceanMFKELIDRLKSILREIEQYASGEYVMIEELKDIINSLENSKCSNDMFCGMDKKW*
Ga0163108_1032165423300012950SeawaterVFEEQIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW*
Ga0181374_103284233300017702MarineKVIIVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0181432_100324723300017775SeawaterMFEELMNKLTAILLAIEDDVSSDVIQELEDIIESLEESKCSNDMFCGMDKKF
Ga0181432_104904623300017775SeawaterMFEELLNRLTAILLSIEDDVSSDVIRELEDVIQSLEESKCSNGMFCGMDKKW
Ga0181432_106105843300017775SeawaterYRIMFEELLNKLTAILLSIEDDVSSEIVIELEDIINSLENSKCKNDMFCGMDKKW
Ga0181432_111310033300017775SeawaterMFEELIGRLTAILREIEQNASNEKEVISELEDVIYSLKNSKCKNDMFCGMDKKW
Ga0181432_111536413300017775SeawaterMFEQLIDRLKAILREIEQYASGEYIVIEELKDIINSLENSKCSNDMFCGMDKKW
Ga0181432_121589913300017775SeawaterLLNRLTAILLSIENDVTSDIIIELEDIINSLENSKCKNDMFCGMDKKW
Ga0211656_1011619633300020375MarineMFEELLNRLTAILLSIEDDVSSDVIIELENIIRSLEESKCSNDMFCGMDKKF
Ga0211575_1017424533300020407MarineMFEKLIEKITDILLTIEDDVSIEIIQELESIIKSLENSKCKNDMFCGMDKKW
Ga0211603_1021563713300020427MarineMFEKLIEKIMSVLQSIENDVSQEITKELRDIIDLLENSKCSNGMFCGMDKKW
Ga0211603_1029756433300020427MarineMFEELIGRLEAILREIEQNASNEKEVISELEDIINSLENSKCKNDMFCGMDKKW
Ga0211639_1048107423300020435MarineMFEELMNKLSAILLSIEDVVPSDVIIELENIIRSLEESKCSNDMFCGMDKKF
Ga0206685_1019269913300021442SeawaterMFEKLIEKITDILLTIEDDVSIEIIQELESIIKSLENSKCKNDMFCG
Ga0187833_1016267223300022225SeawaterMFEKLIEKIMAVLQSIENDVSQEITKELKDIIDLLENSKCSNGMFCGMDKKW
Ga0187833_1022875213300022225SeawaterVFEELIKKLTAILLSIEDVVPSEVIIELEDIIRSLEESKCSNDMFCGMDKKF
Ga0187833_1043290833300022225SeawaterMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW
Ga0187827_1009722713300022227SeawaterVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0207902_104414633300025046MarineLLSIEDDVSSEVIQELEDIIQSLEKSKCSNGMFCGMDKKW
Ga0208920_100139623300025072MarineVFEELIKKLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW
Ga0209644_107873423300025125MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCGMDKKW
Ga0209644_115016523300025125MarineMFEELMNKLTAILLSIEDVVPSDVIIELENIIQSLEESKCSNDMFCGMDKKF
Ga0209128_114444323300025131MarineVFEELIKKLTAILLSIEDVVPSEVIIELEDIIRSLEESKCSNDMFCGMDKKW
Ga0208299_120919513300025133MarineMFEELIDRLTAILQEIEQNASNEKELVSKLEDIIDSLKNSKCSNGMFCGMDKKF
Ga0209756_109664733300025141MarineMFEELIDRLTAILLSIEDDVSSEIIIELEDIINSLENSKCSNGMFCGMDKKW
Ga0208467_101023333300025265Deep OceanDILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW
Ga0207894_107315113300025268Deep OceanMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDK
Ga0209757_1016356323300025873MarineMFEELLNRLTAILLSIENDVTSDIIIELEDIINSLENSKCSNDMFCGMDKKW
Ga0207963_102780733300026080MarineMFEELLNRLTAILLSIEDDVSSEVVIELEDIINSIENSKCKNDMFCGMDKKW
Ga0208113_100734193300026087MarineMFEELLNRLTAILLSIEDDVSSEIVIELENIINSLENSKCSNNMFCGMDKKW
Ga0208129_103523253300026193MarineRIMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0208129_111747623300026193MarineRIMFEELIDRLTAILQEIEQNASNEKELVSELEDIIDSLKNSKCSNGMFCGMDKKW
Ga0208131_104747623300026213MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCSNDMFCGMDKKF
Ga0208522_102788113300026254MarineIEQNASNEKELVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0207990_103440943300026262MarineMFEELIERLMSILRDIENDASPEIVSELKDIINSLGNSECKNGMFCGMDKKWL
Ga0208766_114352413300026269MarineMFEELIDRLTVILQEIEQNASNEKELVSKLEDIIDSLKNSKCSNGMFCGMDKKF
Ga0209554_110140913300027685MarineMFEELIEKLMSILQGIENNVSQEIVSELKDIINSLENSKCSNDMFCGMDKKF
Ga0257108_100867853300028190MarineMFEELINKLTAILLAIEDDVSSEVIQELEDIIESLEESKCSNDMFCGMDKKF
Ga0257108_104783833300028190MarineMFEELMNKLTAILLAIEDDVSSEVIQELEDIIQSLEESKCSNDMFCGMDKKF
Ga0257108_105942733300028190MarineMFEELLNRLTAILLSIEDDVSSDVIIELEDIINSIENSKCKNDMFCGMDKKW
Ga0257108_107717723300028190MarineMFEELLNRLTAILLSIEDDVSSEVIIELEDIINSIENSKCKNDMFCGMDKKW
Ga0257108_109683923300028190MarineMFEELIKKLTSILRDIESESIRFHVPEIVSELKDIINSLEKSKCSNDMFCGMDKKW
Ga0257107_104671533300028192MarineMFEELLNRLTAILLSIEDDVSSDVIQELEDVIQSLEESKCSNGMFCGMDKKW
Ga0310121_1005961653300031801MarineMFEELLNKLTAILLSIEDDVSSDVIRELEDVIQSLEESKCSNGMFCGMDKKW
Ga0310121_1015560023300031801MarineMFEELLNRLTAILLSIEDDVPSDVVIELEDIINSIENSKCSNDMFCGMDKKW
Ga0315329_1001737263300032048SeawaterMFEELIKKLTSILQDIESESIRFHVPEIVSELKDIINSLEKSKCSNDMFCGMDKKW
Ga0315329_1058556913300032048SeawaterMFDELIERLKAILQEIEQNASNEKEVVSELEDIIDSLKN
Ga0315338_102441533300032138SeawaterMFDELIERLKAILQEIEQNASNEKEVVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0310345_1003527223300032278SeawaterMFEELLNRLTAILLSIEDDVPSDVVIELEDIINSIENSKCKNDMFCGMDKKW
Ga0310345_1014647743300032278SeawaterMFEQLIDRLKAILREIEQYASGEYIVIEELKDIINSLENSKCSNDMFCGMDKKF
Ga0310345_1037493413300032278SeawaterKIINTYIKRGYVIMFDELIERLKAILQEIEQNASNEKEVVSELEDIIDSLKNSKCSNDMFCGMDKKW
Ga0310345_1116986423300032278SeawaterMFEKLLNRLTAILLSIENDVTSDIIIELEDIINSLENSKCSNDMFCGMDKKW
Ga0310342_10025194363300032820SeawaterMFDELIERLKAILQEIEQNVSNEKEVVSELEDIIDSLKNSKCSNDMFCGMDKKW


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