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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007512 Open in IMG/M |
| Scaffold ID | Ga0105016_1010461 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Bigelow Laboratory Single Cell Genomics Center (SCGC) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10809 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 247 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003330 | Metagenome / Metatranscriptome | 493 | Y |
| F023318 | Metagenome | 210 | Y |
| F040060 | Metagenome | 162 | Y |
| F047632 | Metagenome | 149 | Y |
| F081218 | Metagenome / Metatranscriptome | 114 | Y |
| F103058 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105016_10104612 | F103058 | GAGG | MKMVIVFDTDDREGMKNTIKIVDQLAIDYLGRGLRETHKRNFGKIEFIKMLRSFAAEVSLATSDDSTDEDGTGLRFAKVFSEKVWERKENDGRW* |
| Ga0105016_10104613 | F003330 | N/A | MRKRDAWDEPIPQVGDVVMSLPLEGDPGTVVKILQVNANGAWVVAVKWFTWDGGRTTEEYINELRIVSPV* |
| Ga0105016_10104614 | F081218 | GAG | MRFQKGDWVKWVGGSYQNLKGIVIDTRLSFHDTPEVRVIWDDNSLGSLKQRSRGSWQRASCLKVLSSMEQDDENR* |
| Ga0105016_10104615 | F047632 | GGA | MKIGDFVQWRDQTNYPGLCGIVTKTGIYTPDLELELDSPDIFVHWTNFPKEYAVGAGWEKRKDVELLSPGETE* |
| Ga0105016_10104616 | F040060 | GGAG | MIRVGDLVHGHWFHRKIGVVTKIDDVAEMAFVQYSDRTNSWESLCNLRKAVK* |
| Ga0105016_10104619 | F023318 | GGA | MTANNTNIFLVTNSSEDSIVAFSNIGTALEFVRDSHGDLNAEGSALMLETASGLVPATNKAVKDRNFTGRTLSFSATDAIGADLVSAAQSKLDGALQACELVGVDPSNVAMVANLRDALEVAQADASVSNLAEVVTFALAILPLHKRKHNKRS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |