Scaffold Ga0104999_1022065

Overview

Basic Information

• Taxon OID: 3300007504
• Scaffold ID: Ga0104999_1022065
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3672
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051207	Metagenome / Metatranscriptome	144	Y
F103414	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104999_10220653	F001235	GAG	MGTKLNVDTGGLDIGKKLWDKHQADEYTHVDHYKEAICINCFSKDASAATIVDICGECAGKRGREPLLATVTQKMYGLCFFCGKHKFNIEQINARFCKKCHRKIANVTKEYNKKGGMFGADPFWISMRKKHGKDWKHIMNKNIGNRR*
Ga0104999_10220655	F103414	AGG	LSSFIFRAAGFNEIIKLLRETNKSLKSIERLLEFTLSPPDLAKYKKGMSLDDIPRMKLSEAGNPSDQS*
Ga0104999_10220656	F051207	N/A	MASSIYIYTNLEDYENLYKGKQEAYTYETPILDFFIRPTQGYSAEDSIESNKLWVVTHTDKVKMRPSLDRTIVHFSNGSCFNFLCGNELQVEKEKIFYNPKTNQLEFYPRRFRQKPLLSLKVDKVIGGKPKKRSMIRFKNKYYDMVHDRLNLFV*