Scaffold Ga0104999_1011704

Overview

Basic Information

• Taxon OID: 3300007504
• Scaffold ID: Ga0104999_1011704
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6244
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003330	Metagenome / Metatranscriptome	493	Y
F030754	Metagenome	184	Y
F103058	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104999_10117045	F030754	GAGG	MSRTPKGNNASALANGNRLAADLTHGVTCTFAGGCRVFDVNIHKKHEMHWLCEHHGGVSNHSRANARDEEFVNGIPGAERRARFARVRNKQRKAAGFTAHIPSFLDPRPTPPKAKAKKATPKVQGKSQKQLRREAAMAELGLTEADILKFAEIN*
Ga0104999_10117046	F103058	GAGG	MKMVIVFDTEDDQGMKNTLKIVDQLARDYFGRGMDDSYKRNFGKIEFIKMLRTFAQKVKIEVEDDDVTRDGSSLRFSKDFAEEVWRRKEDGNRYQ*
Ga0104999_10117047	F003330	GGA	MRKHDAWGKPILRVGDVVQSLPLKDDPGTVVKILQVNANGAWVVAVKWFTWDGGRTTEEYITELELVSEA*