Scaffold Ga0079920_1037250

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079920_1037250

Scaffold Ga0079920_1037250

Overview

Basic Information
Taxon OID	3300007301 Open in IMG/M
Scaffold ID	Ga0079920_1037250 Open in IMG/M
Source Dataset Name	Hydrothermal vent microbial communities from Teddy Bear hydrothermal vent, East Pacific Rise - large volume pump, sample 5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Bigelow Laboratory Single Cell Genomics Center (SCGC)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	718
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Fluid → Hydrothermal Vent Microbial Communities From Teddy Bear Hydrothermal Vent, East Pacific Rise

Source Dataset Sampling Location
Location Name	Teddy Bear Hydrothermal Vent, East Pacific Rise
Coordinates	Lat. (^o)	9.847222	Long. (^o)	-104.2975	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009692	Metagenome / Metatranscriptome	314	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079920_10372501	F009692	N/A	HWGSFATQIENEFHRNAITIADDTHNLLLQSSDLTGNTTAVFHLYVSVRHSTATNDAYQVANFIVRAEKAVPADCYLHTIADGGNIGTEFDAVDENAYSTYANVTDGNVGVGVTADANGWYVYLANRSSHSVVAGFKAIAITN*

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