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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007301 Open in IMG/M |
| Scaffold ID | Ga0079920_1027230 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent microbial communities from Teddy Bear hydrothermal vent, East Pacific Rise - large volume pump, sample 5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Bigelow Laboratory Single Cell Genomics Center (SCGC) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 793 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Fluid → Hydrothermal Vent Microbial Communities From Teddy Bear Hydrothermal Vent, East Pacific Rise |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Teddy Bear Hydrothermal Vent, East Pacific Rise | |||||||
| Coordinates | Lat. (o) | 9.847222 | Long. (o) | -104.2975 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002715 | Metagenome / Metatranscriptome | 535 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0079920_10272302 | F002715 | AGG | MPEEELQSVKLEVGLLKNEVEVRGRQIDTLLSKLDHTADKLQELTVEIRTLNTRQEDYLRTNTSMSNEFKILHTRIGDLHDKLSSNNRRIEERLDHLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |