Scaffold Ga0101452_103407

Overview

Basic Information

• Taxon OID: 3300007280
• Scaffold ID: Ga0101452_103407
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ18 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14022
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066238	Metagenome / Metatranscriptome	127	N
F079989	Metagenome	115	Y
F090322	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101452_1034071	F090322	GAGG	MPRSLSTDLQTQVSAQQTKTAFLVELGLSTTIRLTDWYSDVTYDSNSYEAGGSFLTVDS
Ga0101452_10340710	F066238	GAG	MPMEFDRDFNGYLDATYGHGIQVTYTPTGGSSSSINVILNQEYVDIDTAGLPVQGYQPVAQAKTTDIPNIAFGDTIVAPAIKNLDGTQIKPSTTYKVINYEHDNLGMTSLLLEVQ*
Ga0101452_10340723	F079989	N/A	MKTYLDESFESELKKLRIYESESFQRWGSRKRIFKMLGVDFEIKFCRAESMFKDALYKGHVKEKIKMVEMMTRAFDSLNKKCEESGYTRIQPNTRCFNFDKKTALVCDTDDEKPILQKIHKDEPDMMIXXRRIIKMYSSRFYEG*