Scaffold Ga0079919_1025002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079919_1025002

Scaffold Ga0079919_1025002

Overview

Basic Information
Taxon OID	3300007279 Open in IMG/M
Scaffold ID	Ga0079919_1025002 Open in IMG/M
Source Dataset Name	Hydrothermal vent microbial communities from Crab Spa hydrothermal vent, East Pacific Rise - large volume pump, sample 4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Bigelow Laboratory Single Cell Genomics Center (SCGC)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	524
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Fluid → Hydrothermal Vent Microbial Communities From Crab Spa Hydrothermal Vent, East Pacific Rise

Source Dataset Sampling Location
Location Name	Crab Spa Hydrothermal Vent, East Pacific Rise
Coordinates	Lat. (^o)	9.844167	Long. (^o)	-104.296667	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056737	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079919_10250023	F056737	N/A	IISLSATTKGADSNSDVQLAEIALTLKRLKTAASVSVNVIVIVSAFPESSDTSIDLMTAVVALGTVYNVVALVLVKSTFLLTNVFAIMQ*

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