Scaffold Ga0070747_1018493

Overview

Basic Information

• Taxon OID: 3300007276
• Scaffold ID: Ga0070747_1018493
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2859
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063096	Metagenome / Metatranscriptome	130	Y
F097370	Metagenome / Metatranscriptome	104	Y
F100469	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070747_10184931	F100469	AGAAGG	MSELTTNPKAYLNGSYVNFERNGKRATGFVSEVFDEGFGVDMVVHNDKGFPNHNTDYTVFVKTDEVYR*
Ga0070747_10184932	F097370	N/A	MGDSVMEKVNLSGLDATEICEILHEKCKFHDWTYMMSDDSRAYHAGLAEADEIEYIRGVLDAMGFEMTAKTIIEGWKPNSLKVEGYLV*
Ga0070747_10184938	F063096	AGGAGG	MKVELVDIKDVSKFRVGFELVEFEAGTDPEEGFCLLGFDEVGMFCENPRYAWIGE*