Basic Information | |
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Taxon OID | 3300007276 Open in IMG/M |
Scaffold ID | Ga0070747_1018493 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2859 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.124826 | Long. (o) | -75.260873 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F063096 | Metagenome / Metatranscriptome | 130 | Y |
F097370 | Metagenome / Metatranscriptome | 104 | Y |
F100469 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070747_10184931 | F100469 | AGAAGG | MSELTTNPKAYLNGSYVNFERNGKRATGFVSEVFDEGFGVDMVVHNDKGFPNHNTDYTVFVKTDEVYR* |
Ga0070747_10184932 | F097370 | N/A | MGDSVMEKVNLSGLDATEICEILHEKCKFHDWTYMMSDDSRAYHAGLAEADEIEYIRGVLDAMGFEMTAKTIIEGWKPNSLKVEGYLV* |
Ga0070747_10184938 | F063096 | AGGAGG | MKVELVDIKDVSKFRVGFELVEFEAGTDPEEGFCLLGFDEVGMFCENPRYAWIGE* |
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