Scaffold Ga0101448_107348

Overview

Basic Information

• Taxon OID: 3300007273
• Scaffold ID: Ga0101448_107348
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ14 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8167
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → Puniceispirillum phage HMO-2011 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021014	Metagenome	221	Y
F040605	Metagenome / Metatranscriptome	161	Y
F073277	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101448_10734810	F021014	AGGAG	MGYEVKDGDVAIIISPDVEDGEWTGVLKTGLIFGESKYPEAMRNAMDYALTMAATTAVLEDYPELMDYFDDARHTILKEMFPKQYAESELELNKDMEYTKEGNVIKLTKWTKTLGEA*
Ga0101448_10734812	F040605	N/A	MEVDEDNNFLSAHEEGHTEDVHDLVSNVMHDVDDIRIYNLLVKERE*
Ga0101448_1073483	F073277	AGGAG	MKLAVTIDVDGDIMYVPEGAVFENFPKPKLFDNMEDAEEERAKWNTGVIVNYETGRSVQQIRSFTDAERARAEERARINRDDGTSTDQDTTQ*