NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101450_115572

Scaffold Ga0101450_115572


Overview

Basic Information
Taxon OID3300007266 Open in IMG/M
Scaffold IDGa0101450_115572 Open in IMG/M
Source Dataset NameMarine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ16 time point
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3837
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054343Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0101450_1155727F054343N/AMFSNGVVGFLDPLDVDGTGYIHDGLCCNGEDFASGATGVRFHYTIMPWHTDLIDTGVGKFYTQGDETFQKYMWENLSEYYDRNTSNTFDLTIYPMGNIEVNYEKVHIKNHSVTVGVVGDLSAGEYEQWFYNHPTNGAVYWDSQEDDPVEI

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