Scaffold Ga0101451_113100

Overview

Basic Information

• Taxon OID: 3300007263
• Scaffold ID: Ga0101451_113100
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ17 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8399
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F019114	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101451_11310010	F019114	GGAGG	MKHLKGRMEVARDEFYRNRRNRGFMSFWWSDXLHYVLGLEVAIADVSGKSINFEAIVKLLPSSMGSRSTIATVLDDFVARGYMCKTVGKDKRKRVYRICREPMQLLDNWFIERQRSLKAVS*
Ga0101451_11310014	F004603	AGGA	MIFSININGSIVDWCYTINNQEKQYHQTWIPKLKDIQIITKDLNGLTVSEVKKTILEDIQPDIQMVRDNTNKKARARRQKNV*
Ga0101451_11310015	F002399	AGGA	MNLRKSHKSVIGQLRKKYGLKDNTPIHKVEQIMTPEDWKTFSEALTFPNGKPTQRGK*