Scaffold Ga0101451

Basic Information
Taxon OID	3300007263 Open in IMG/M
Scaffold ID	Ga0101451_100927 Open in IMG/M
Source Dataset Name	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ17 time point
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007263 Open in IMG/M

Scaffold ID

Ga0101451_100927 Open in IMG/M

Source Dataset Name

Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ17 time point

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Australian Centre for Ecogenomics

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9160
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

9160

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location Name	Port Hacking, Australia
Coordinates	Lat. (^o)	-34.1192	Long. (^o)	151.2267	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Port Hacking, Australia

Coordinates

Lat. (^o)

-34.1192

Long. (^o)

151.2267

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F052547	Metagenome / Metatranscriptome	142	N
F073533	Metagenome / Metatranscriptome	120	N
F077304	Metagenome / Metatranscriptome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0101451_10092712	F073533	N/A	IKRVPDIDFKIVLDVDKYLDGELDDWYKKLKLFVNGSVQFRRNYYKGVFDRISYNELCQKAYDDFHAPVVITPSFLTDRNARGKVEQHLANFRKDMLEQKIDDKWKEYYTFFDAKFNGYGCQNYSFYNGKLYVNPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEYMMSCAERNVHMYMESRDLNSCVAIKEYMYATH*
Ga0101451_1009278	F077304	GAGG	LTNFDFTKVLLEKKRPNIGEIELTLFENCHLNCAFCHHDKKSTVGLSREGMFSKIPLVEDHLKKMQGMVKTCQINMVGGELFQDRISDWAYDVYYDMLIEIKKLYDKYEQEIKVVWVTSFQFSKRDKVQKLLDDLNEADIPSYIICSYDFDGRPVRGPYGKNIEYFADYITSINMVATVPSIERFMKDDDEYFHYLYSKFDNFYFDDYIPDKGFDHLIPSDSLYLDFLTFIFHNYPDINPISDLIKNENNHMHCMALNKVTIFPNNSISNCRWDRYTKSDFNTPLNRQDNASMMQAYMDEHGCLSCKWWDKCGFRCYTQWDWKNRERDLPDCVMRMWFNYMDRIKSGKTQLVSA*
Ga0101451_1009279	F052547	GAGG	MGIATDNKSHAQADKDFDLSFSEGHEIKVQFNCEILSGCEFKCKGCFVNKLGSNVGDFQRLNDAIDLFNENGYRVSTINIGPTDIFGNNNVLELLQDEIFRECLSKVTTIQFVTTLSEQIDLRVIDLLNSIPKKEGFMYDCNVVVEHPIVWGSLQSRLNMLNLFEDDLNYYFVYNMGNDDEDNEKVLDLSKVTDRYFDTILQLNPSFFRAPKSKVQKHMIEKWKSYDFSHDMYPXDQAQGGSLELNFTYCNERFFWTPFVYDIVMIGTDEFEVKEEWNINSWTKVKEDQFLNQLEYTAETEQCAMCPKQMTCIDKGVISYMKHHALTSCVFPDFIRSM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0101451_100927

Overview

Ecosystem & Geography

Associated Families

Sequences