Scaffold Ga0075463_10040296

Overview

Basic Information

• Taxon OID: 3300007236
• Scaffold ID: Ga0075463_10040296
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1522
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F062169	Metagenome / Metatranscriptome	131	N
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075463_100402961	F062169	N/A	HIENILNAEGQGALDAWYVAIHEHPQSAMDIHDEVVDHLVANTFMY*
Ga0075463_100402964	F069451	GAGG	MNPGDLVRIRKTAIDEYSIDWFIYLAEKKAPLLLMEKINKQHWKVMRPDGSTCFLSERKITKRLW*
Ga0075463_100402967	F006383	GGAGG	MLVKDKMWKVQQPGTILRARHSARRGQLALVLARAEPGPRPSNGYPPTEYVKMQMVSTGERIEESLTNANNCWDIVSE