Scaffold Ga0102976_1180862

Overview

Basic Information

• Taxon OID: 3300007169
• Scaffold ID: Ga0102976_1180862
• Source Dataset Name: Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Singapore Centre on Environmental Life Sciences Engineering
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1996
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.286816
  • Long. (^o): 103.867024

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F097357	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102976_11808622	F031872	AGGAG	MVESLVVDEWIYDTLSGDSTLQGLLAVDNRAPNYQQGIYLYLAPEKDPVSLRQPQVPYIVVRHTDAGQTDEKSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKAIVDRIDTLLNKQTVNTTTPVFFLNRSSVSSSVDVSQDGRVDNGIVQLYIATITP*
Ga0102976_11808624	F033435	AGGA	MTSIFDAIPKTEGRPNHVVDIERFIGAPGSFTFREPKAADLFPRPEVQKALKIGFPEFPDQMLQILMIMARCYVIQPGDGEINPPRRFAQLARDRSDIYLYVVGEFAKAFPIDIEAAVDEVPND*
Ga0102976_11808625	F097357	AGG	VAQKILYCSVRHLKRHPSETDLSLDQFAEVAWTGEVWENQIVEIVKAVMSVLAKRTF*