Scaffold Ga0102538_102800

Overview

Basic Information

• Taxon OID: 3300007096
• Scaffold ID: Ga0102538_102800
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 604812005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5920
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067846	Metagenome	125	Y
F073671	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102538_10280012	F073671	AGGCGG	LGERMNKEQAEHELAELHEKERSLEKALELVREKIRELVNYMDKNKGQK*
Ga0102538_1028006	F067846	GAGG	MSIIADWERQEFNKWDKQCSKEDDYNRAVEMEIEAIKENISNLDDDVICAFREKMLDYGEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND*