Scaffold Ga0102622_1022234

Overview

Basic Information

• Taxon OID: 3300007089
• Scaffold ID: Ga0102622_1022234
• Source Dataset Name: Combined Assembly of 100 bp T18 (live) Gp0123698, Gp0123960, Gp0123961
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1034
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Source Dataset Sampling Location

• Location Name: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091989	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102622_10222342	F091989	GAGG	MTLSAYARDIINRARVNCYATDAAKAGDALIRPYGEHDEQKTTLKSLQVSTMALCWVNSEGKLVPFDEAEFAGIQKEIAVLQAKIDHNTKILNELDSKVAELGLTEFSLAKLKGQKEKLRGQIAQIRSEESDALRHKWEAVVSLGGNRGTYDALPEVIEARAKAAAQIEPLEGEIKALNAQIRSLEAILSKFKR*