Scaffold Ga0101642_1041368

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101642_1041368

Scaffold Ga0101642_1041368

Overview

Basic Information
Taxon OID	3300007082 Open in IMG/M
Scaffold ID	Ga0101642_1041368 Open in IMG/M
Source Dataset Name	Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina 'control', cg10ic
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	579
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Upa-Upasina 'control' site, Papua New Guinea
Coordinates	Lat. (^o)	-9.828217	Long. (^o)	150.820517	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065466	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101642_10413681	F065466	N/A	KLRCYYLVTVNWSWCRMMSVTCPLLLCLLSALVEVHSQIVPYVSFMGTNLTNHSYVNLTLVGNTEGDSVQCYTDLASCCYFGQGADRGDWYFPDGHRLQYADGSGDIYENRMAQRVDLRRRNNGDTSGIHRCTIETNAVRSDDNSDTTTRETVYAGLYASGGE*

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