Scaffold Ga0101669_100895

Overview

Basic Information

• Taxon OID: 3300007041
• Scaffold ID: Ga0101669_100895
• Source Dataset Name: Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', water-ic
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 2374
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Upa-Upasina 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002192	Metagenome / Metatranscriptome	585	Y
F059061	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101669_1008951	F059061	N/A	VSNQGETGFFSTLRSGLRETGGFISDVFASGIPQLFGKQRPVGVGQQPAVTTVTNVGAQESQGSGSIQAGVGSVLPSLVSAGRGLLKSPLGQLALGTGSGLALSGLGGQPSGMRITRKMKSQARTILNMTGGNLSAASEILGIDEQTLVMILLKRFRNDGPVVTKAALRKTKQTVRRLKSMCDMYDDLRPRTTARRRSPMKRATTTTLIKN*
Ga0101669_1008954	F002192	N/A	MHQVLLYFSSITAIIALFFGLYACGRVARVLSATKDLDWTAIANMTGDLASTKKTIQTLNNRINGMHSPKIAEQELMMQLLQNQGAKQNGKIVGG*