Scaffold Ga0079218_10263798

Overview

Basic Information

• Taxon OID: 3300007004
• Scaffold ID: Ga0079218_10263798
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012765	Metagenome / Metatranscriptome	277	Y
F027437	Metagenome / Metatranscriptome	194	Y
F096761	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079218_102637981	F096761	N/A	LIRSSYQALVDGMVGQLKSQGASIPEVASSLERWNPVLLQSRVSELEAANAG*
Ga0079218_102637982	F027437	N/A	MTRQITVLEEKHSQDQAEMARRCADFEEKYSQSQIELSQVSAALDDANALSSSLHVQLDSEKVAYESVLRLMMLLGSE*
Ga0079218_102637983	F012765	AGGAG	MEELDNQRRQLQESSDEVARLTQLLSAKDATIKGLRASKKSLAQELETAQQAVKVAEEAAVTFKAQRDKALDKAIRAGRILMRRPGVAVPEDIRADVNAASDSSNRPSSSVVPEKDIRK*