Scaffold Ga0099822_1004513

Overview

Basic Information

• Taxon OID: 3300006943
• Scaffold ID: Ga0099822_1004513
• Source Dataset Name: Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18122
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: California, USA
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022825	Metagenome	212	Y
F058742	Metagenome	134	Y
F075759	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099822_100451314	F058742	N/A	LRNFKKFTKLSKDFGELDDKLIIQHFHHIHTMTHTMYSLNFSTLKIT*
Ga0099822_10045137	F075759	N/A	MLDGDKKNIHAITSNFYIIVNKSDLTIIVKNYSMIDNELENKK*
Ga0099822_10045138	F022825	N/A	MFVYFNFLNSNEYLFYTLIKVIISHHLIKMTERTNNKHNNKILT*