Metagenome Family F075759

Overview

Basic Information

• Family ID: F075759
• Family Type: Metagenome
• Number of Sequences: 118
• Average Sequence Length: 42 residues
• Representative Sequence: MLDGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMIDNELENKK
• Number of Associated Samples: 8
• Number of Associated Scaffolds: 118

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Eukaryota
• % of genes with valid RBS motifs: 1.82 %
• % of genes near scaffold ends (potentially truncated): 9.32 %
• % of genes from short scaffolds (< 2000 bps): 17.80 %
• Associated GOLD sequencing projects: 6
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Eukaryota (58.475 % of family members)
• NCBI Taxonomy ID: 2759
• Taxonomy: All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules (70.339 % of family members)
• Environment Ontology (ENVO): Unclassified (100.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (100.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 56.94%
  β-sheet: 0.00%
  Coil/Unstructured: 43.06%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF07727	RVT_2	4.24
PF00504	Chloroa_b-bind	1.69
PF00078	RVT_1	1.69
PF14223	Retrotran_gag_2	1.69
PF00561	Abhydrolase_1	0.85
PF01179	Cu_amine_oxid	0.85
PF07714	PK_Tyr_Ser-Thr	0.85
PF01775	Ribosomal_L18A	0.85
PF01699	Na_Ca_ex	0.85
PF00069	Pkinase	0.85
PF00576	Transthyretin	0.85
PF04043	PMEI	0.85
PF00319	SRF-TF	0.85
PF00117	GATase	0.85
PF13952	DUF4216	0.85
PF08263	LRRNT_2	0.85
PF02893	GRAM	0.85
PF13963	Transpos_assoc	0.85
PF03062	MBOAT	0.85
PF00122	E1-E2_ATPase	0.85
PF14372	DUF4413	0.85
PF05699	Dimer_Tnp_hAT	0.85
PF05553	DUF761	0.85
PF00704	Glyco_hydro_18	0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	6.78
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.85
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.85
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.85
COG2157	Ribosomal protein L20A (L18A)	Translation, ribosomal structure and biogenesis [J]	0.85
COG2216	K+ transport ATPase, ATPase subunit KdpB	Inorganic ion transport and metabolism [P]	0.85
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.85
COG2351	5-hydroxyisourate hydrolase (purine catabolism), transthyretin-related family	Nucleotide transport and metabolism [F]	0.85
COG3733	Cu2+-containing amine oxidase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.17 %
Unclassified	root	N/A	39.83 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.47 %
Unclassified	root	N/A	39.83 %
Viruses	superkingdom	All Organisms → Viruses	1.69 %

Level 3

Name	Rank	Taxonomy	Distribution
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	58.47 %
Unclassified	root	N/A	39.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 4

Name	Rank	Taxonomy	Distribution
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	58.47 %
Unclassified	root	N/A	39.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 5

Name	Rank	Taxonomy	Distribution
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	58.47 %
Unclassified	root	N/A	39.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 6

Name	Rank	Taxonomy	Distribution
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	58.47 %
Unclassified	root	N/A	39.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 7

Name	Rank	Taxonomy	Distribution
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	58.47 %
Unclassified	root	N/A	39.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	34.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	34.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	34.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	34.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 12

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	31.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 13

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	31.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 14

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	31.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 15

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	31.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 16

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	31.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 17

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	31.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 18

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Fabales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales	31.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 19

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Fabaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	31.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 20

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Papilionoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae	31.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 21

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
50 kb inversion clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade	31.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %

Level 22

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
NPAAA clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade	30.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
genistoids sensu lato	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato	0.85 %

Level 23

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
indigoferoid/millettioid clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade	29.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
core genistoids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids	0.85 %
Hologalegina	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → Hologalegina	0.85 %

Level 24

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Phaseoleae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	29.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
Genisteae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae	0.85 %
IRL clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → Hologalegina → IRL clade	0.85 %

Level 25

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Vigna	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna	24.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
Phaseolus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Phaseolus	0.85 %
Trifolieae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → Hologalegina → IRL clade → Trifolieae	0.85 %
Lupinus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus	0.85 %
Cajanus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Cajanus	0.85 %

Level 26

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Vigna unguiculata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	22.88 %
Vigna angularis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna angularis	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
Phaseolus vulgaris	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Phaseolus → Phaseolus vulgaris	0.85 %
Medicago	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → Hologalegina → IRL clade → Trifolieae → Medicago	0.85 %
Cajanus cajan	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Cajanus → Cajanus cajan	0.85 %
Lupinus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus	0.85 %

Level 27

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Vigna unguiculata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	22.88 %
Vigna angularis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna angularis	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.69 %
Medicago truncatula	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → Hologalegina → IRL clade → Trifolieae → Medicago → Medicago truncatula	0.85 %
Phaseolus vulgaris	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Phaseolus → Phaseolus vulgaris	0.85 %
Cajanus cajan	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Cajanus → Cajanus cajan	0.85 %
Lupinus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus	0.85 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300006943|Ga0099822_1000242	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	44107
3300006943|Ga0099822_1001999	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	24845
3300006943|Ga0099822_1002464	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	23041
3300006943|Ga0099822_1003294	Not Available	20669
3300006943|Ga0099822_1003314	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	20603
3300006943|Ga0099822_1004277	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	18547
3300006943|Ga0099822_1004513	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	18122
3300006943|Ga0099822_1007094	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	14531
3300006943|Ga0099822_1008705	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	12944
3300006943|Ga0099822_1009355	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	12362
3300006943|Ga0099822_1010523	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	11465
3300006943|Ga0099822_1010625	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	11384
3300006943|Ga0099822_1015682	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	8464
3300006943|Ga0099822_1015708	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	8453
3300006943|Ga0099822_1019779	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	6796
3300006943|Ga0099822_1019870	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	6764
3300006943|Ga0099822_1021116	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	6348
3300006943|Ga0099822_1021635	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	6195
3300006943|Ga0099822_1022977	Not Available	5813
3300006943|Ga0099822_1024103	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	5500
3300006943|Ga0099822_1024943	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	5281
3300006943|Ga0099822_1025658	Not Available	5090
3300006943|Ga0099822_1025802	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna angularis	5057
3300006943|Ga0099822_1026144	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	4978
3300006943|Ga0099822_1026334	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	4935
3300006943|Ga0099822_1026579	Not Available	4879
3300006943|Ga0099822_1026590	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	4877
3300006943|Ga0099822_1026995	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → Hologalegina → IRL clade → Trifolieae → Medicago → Medicago truncatula	4790
3300006943|Ga0099822_1031218	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3933
3300006943|Ga0099822_1033281	Not Available	3570
3300006943|Ga0099822_1033906	Not Available	3465
3300006943|Ga0099822_1034572	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3362
3300006943|Ga0099822_1035223	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3261
3300006943|Ga0099822_1035923	Not Available	3160
3300006943|Ga0099822_1036000	All Organisms → Viruses → Predicted Viral	3147
3300006943|Ga0099822_1037164	Not Available	2992
3300006943|Ga0099822_1037687	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	2923
3300006943|Ga0099822_1040639	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	2570
3300006943|Ga0099822_1040735	Not Available	2559
3300006943|Ga0099822_1042565	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	2365
3300006943|Ga0099822_1043499	Not Available	2279
3300006943|Ga0099822_1044998	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	2147
3300006943|Ga0099822_1045786	Not Available	2082
3300006943|Ga0099822_1050180	Not Available	1764
3300006943|Ga0099822_1052997	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1594
3300006943|Ga0099822_1053094	All Organisms → Viruses → Predicted Viral	1588
3300006943|Ga0099822_1055947	Not Available	1449
3300006943|Ga0099822_1061894	Not Available	1218
3300006943|Ga0099822_1066267	Not Available	1085
3300006943|Ga0099822_1075981	Not Available	876
3300006943|Ga0099822_1077817	Not Available	845
3300006943|Ga0099822_1078411	Not Available	836
3300006943|Ga0099822_1080163	Not Available	808
3300006943|Ga0099822_1083391	Not Available	764
3300006943|Ga0099822_1085015	Not Available	744
3300006943|Ga0099822_1089660	Not Available	691
3300006943|Ga0099822_1091416	Not Available	673
3300006943|Ga0099822_1094679	Not Available	644
3300006943|Ga0099822_1100286	Not Available	600
3300006943|Ga0099822_1104189	Not Available	573
3300006944|Ga0099823_1005478	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	12682
3300006944|Ga0099823_1025242	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	5327
3300006944|Ga0099823_1031139	Not Available	4422
3300006944|Ga0099823_1033653	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	4106
3300006944|Ga0099823_1036414	Not Available	3779
3300006944|Ga0099823_1051313	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2503
3300006944|Ga0099823_1053301	Not Available	2375
3300006944|Ga0099823_1055291	Not Available	2255
3300006944|Ga0099823_1059753	Not Available	2019
3300006944|Ga0099823_1064468	Not Available	1798
3300006944|Ga0099823_1075062	Not Available	1415
3300021320|Ga0214544_1000790	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	61282
3300021320|Ga0214544_1001046	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	55653
3300021320|Ga0214544_1001669	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	46641
3300021320|Ga0214544_1001671	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	46620
3300021320|Ga0214544_1001745	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Phaseolus → Phaseolus vulgaris	45591
3300021320|Ga0214544_1001778	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	45276
3300021320|Ga0214544_1002287	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	40416
3300021320|Ga0214544_1002400	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	39366
3300021320|Ga0214544_1002915	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	35722
3300021320|Ga0214544_1003191	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	34219
3300021320|Ga0214544_1003616	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	31727
3300021320|Ga0214544_1007632	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	18805
3300021320|Ga0214544_1009099	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	15858
3300021320|Ga0214544_1009784	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus	14708
3300021320|Ga0214544_1009819	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	14648
3300021320|Ga0214544_1011485	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Cajanus → Cajanus cajan	12201
3300021320|Ga0214544_1011719	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	11924
3300021320|Ga0214544_1012284	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	11265
3300021320|Ga0214544_1012489	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	11004
3300021320|Ga0214544_1013845	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	9483
3300021320|Ga0214544_1013957	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	9366
3300021320|Ga0214544_1015277	Not Available	8099
3300021320|Ga0214544_1019347	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	5249
3300021320|Ga0214544_1020970	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	4441
3300021320|Ga0214544_1022248	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	3889
3300021320|Ga0214544_1023457	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3439
3300021320|Ga0214544_1026396	Not Available	2593
3300021320|Ga0214544_1027124	Not Available	2434
3300021321|Ga0214542_1007480	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	18980
3300021321|Ga0214542_1019465	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	5335
3300021321|Ga0214542_1057169	Not Available	652
3300021324|Ga0214545_1004713	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna angularis	25330
3300021324|Ga0214545_1024090	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3838
3300021327|Ga0214543_1013811	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	9875
3300027296|Ga0209389_1033966	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	4188
3300027296|Ga0209389_1044372	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3300
3300027296|Ga0209389_1058251	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2459
3300027296|Ga0209389_1123546	Not Available	692
3300027357|Ga0209589_1030314	Not Available	2990

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Class

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Category

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	100.00%

Type

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	100.00%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	100.00%

Habitat

Habitat	Taxonomy	Distribution
Root Nodules	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules	70.34%
Root Nodules	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules	29.66%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300006943	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW	Host-Associated
3300006944	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW	Host-Associated
3300021320	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3	Host-Associated
3300021321	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1	Host-Associated
3300021324	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4	Host-Associated
3300021327	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2	Host-Associated
3300027296	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes)	Host-Associated
3300027357	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes)	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0099822_10002427	3300006943	Root Nodules	MLDDNKKIFMTITLNFYIVVNKSYLYNYSEKNNMIDNELENKK*
Ga0099822_10019999	3300006943	Root Nodules	MLNGDKKTFMTITLHFYIIVNKNYLYNYSEKKYSMIDNELEN*
Ga0099822_100246444	3300006943	Root Nodules	MLDGDKKIFMAITLNFYIVVNKIYLYNYGEKNYSMIDNELENKK*
Ga0099822_10032941	3300006943	Root Nodules	MLDGDKNIFMDITLNLYTIVNKSYLYNYSEKNYSMIDNELENKK*
Ga0099822_100331424	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMIDNELENKK*
Ga0099822_100427715	3300006943	Root Nodules	MTITLNFYIIVNKSYLYNYRKKYYNMIDNELENKK*
Ga0099822_10045137	3300006943	Root Nodules	MLDGDKKNIHAITSNFYIIVNKSDLTIIVKNYSMIDNELENKK*
Ga0099822_10070948	3300006943	Root Nodules	MTITLNFYIVVNKSYLYNYSEKITVYMIDNELENKK*
Ga0099822_10087051	3300006943	Root Nodules	MLDSDKKIFMTITLHFYFVVNKSYLYNYSEKNYIMIDNELENKK*
Ga0099822_10093551	3300006943	Root Nodules	MLDGDNKIFMTITLNFYIVVNKIYLYNYSEKHYSMIDNELENNK*
Ga0099822_101052315	3300006943	Root Nodules	MLDGDKKIFMAITLNFYIVVNKSYLYNYSEKNYSMTDNELENKK*
Ga0099822_10106258	3300006943	Root Nodules	MLKGDKKIFMSITSDFYIVVNKSYLYNYTEKKYSMIDNELKNKK*
Ga0099822_10108611	3300006943	Root Nodules	LYLLNSNICFDGDKKIFITITLNFYFVVKKSYLYNYSEKNYSVIDNELENKK*
Ga0099822_10154972	3300006943	Root Nodules	MLDGDKKIFMAITLNFYIVVIKSYLYNYIDKGYGMIDNELENKK*
Ga0099822_10156828	3300006943	Root Nodules	MAITLIFYIVVNKSYLYNYSEKNYSMIDNELENKK*
Ga0099822_10157087	3300006943	Root Nodules	MKITLNFYIVVNTIYLYNYSEKDYNMIDNELENKK*
Ga0099822_10197796	3300006943	Root Nodules	MTITLNFYIVVNKSYLYNYSEKNSMIDNELENKK*
Ga0099822_10198701	3300006943	Root Nodules	TSIMLDGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMIDNKLENKK*
Ga0099822_10211167	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIVVNKIYLYNYSENNYSMIDELENKK*
Ga0099822_10216355	3300006943	Root Nodules	MAITLNFYIVVNKSYLYNYSEKNYSMIDNELENKK*
Ga0099822_10229778	3300006943	Root Nodules	MLDGDKKLFMTITLNFYIVVNKSYLYNYSEKNYSIIDNELENKK*
Ga0099822_10241033	3300006943	Root Nodules	MTIALNFYIVVNKSYLYNYSEILSMIDNELENKK*
Ga0099822_10249431	3300006943	Root Nodules	MFDGDKKIFMTITLNFYIVVNKSYLYNYSERNNMIDNELENKK*
Ga0099822_10256581	3300006943	Root Nodules	MLDGDKKLFMSITLNFYVVINKNYLYNKKINYSMIDNELENKK*
Ga0099822_10258021	3300006943	Root Nodules	LDGDKKIFMAITLNFYIVVNKSYLYNYSEKYYSMINNELENKNN*
Ga0099822_10261446	3300006943	Root Nodules	FELQYILVGDKKKIIAITLNFYIVVNKSYLYNYSEKIMIDNELEIKSN*
Ga0099822_10263341	3300006943	Root Nodules	MLDGDKKIFMTITLNFYYRNKSYLYNLVKNYSMIDNELENKN*
Ga0099822_10265795	3300006943	Root Nodules	MLDGDKNIFMTITLNFYIVVNKSYLYNYSEKNNMIDNELENKK*
Ga0099822_10265908	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMIYNELENKK*
Ga0099822_10269952	3300006943	Root Nodules	MLDGDTKIFMTITLNFYIVVNKSYLYNYSEKNYSMIDNELENKK*
Ga0099822_10294204	3300006943	Root Nodules	MIITLNFYIVVNKSYLYNYCEKNYNIVDNELKNKK*
Ga0099822_10309411	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIGINKSYLYNYSENYNMIDNELENKNN*
Ga0099822_10312181	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIVVNKSYLYNYSEKNYSMIDNELEKKIR*
Ga0099822_10332811	3300006943	Root Nodules	MLDGDKKIFMTITLIFYIVVNEVIYTIIVKNYSMIDNELENKK*
Ga0099822_10339062	3300006943	Root Nodules	MLDGDKKIFMTITLNFHIVVNQSYLYNYSKKNNMIDNELEKQDIHVVPN*
Ga0099822_10345723	3300006943	Root Nodules	LDGDKKIFMTITLNFYIVVNKIYLYNYSEKLDNELENKK*
Ga0099822_10352234	3300006943	Root Nodules	MLDGDKKIFMAITLNFYIVVNKSYLYNYSEKINYSMIDNDLKNKIKKNR*
Ga0099822_10359231	3300006943	Root Nodules	MLDGDKIIFMAITLNFYIVVNKSYLYYYNEKNYSMIDNELENKK*
Ga0099822_10360001	3300006943	Root Nodules	MLDGDNKIFMTIKLNFYIILNKSYLYNYSEKNYSMIDNELKNKKNN*
Ga0099822_10371643	3300006943	Root Nodules	MLDGDIPIFTEIILNFYIVVNKSYLYNYSEKNYSMIDNKLENKK*
Ga0099822_10376877	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIVVNKIYLYNYVKNYSMIHNELENKK*
Ga0099822_10406391	3300006943	Root Nodules	MLDVDKNIFMTITLNFYIVVNKSYLYNYSEKNYNMVDNELENKKITR*
Ga0099822_10407353	3300006943	Root Nodules	MLDGDKKIFMTITLIFYIVVNKSYLYNYSKKNYSMIDNELENKK*
Ga0099822_10425653	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIIVNKSYLYNYSEKNSMIDNELENKK*
Ga0099822_10434993	3300006943	Root Nodules	MAIKLNFYIVVKKSYLYNYSEKNYSMMNNELENKK*
Ga0099822_10449981	3300006943	Root Nodules	MLDGDKKNIQAITLNFYIVVNKNCVYNYIEKSQSMIVMS*
Ga0099822_10457863	3300006943	Root Nodules	MLDSDKKIFIAIKLIFYIVVNKVIYTIKVKKYSMIDNELENKKIIR*
Ga0099822_10501801	3300006943	Root Nodules	MTITLNFYIVVNKSYLYNYSEKNYSMIDNELENKK*
Ga0099822_10529971	3300006943	Root Nodules	MLDGDKKKIMTITLNFYIVVNKSYLYNYSEKNNMIDNELENKK*
Ga0099822_10530941	3300006943	Root Nodules	MTITLNFYIVVNKSYLYNYSEKNYNMIDNELEKKK*
Ga0099822_10559472	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIVVNKSYLYK*ENYSMIDNDFENKKIIR*
Ga0099822_10618942	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIVVNKSYLYNYSEKNYSMIDNEF*
Ga0099822_10662671	3300006943	Root Nodules	MLDGDKKKFMAITLNFYIVVNTNYLYNYSEKIKDDCNELENKK*
Ga0099822_10759811	3300006943	Root Nodules	MLDGAKRIFMAITLNFYIVVNKNYLYNYSEKNKV*
Ga0099822_10778171	3300006943	Root Nodules	MLDDDKKIFMAITLNFYIVVNKNYLYNYSEKNLSMIVMS*
Ga0099822_10784111	3300006943	Root Nodules	MLDGNKKILMTITLNFYIVVNKSYLYNYSEKNYSMIDNELENKK*
Ga0099822_10801631	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIVVNKFYLYNYSKKIIMIDNELENKK*
Ga0099822_10833911	3300006943	Root Nodules	LDGDKKIFMTITLNFYIVVNKNYLYNYREKNYSMIDNELENKK*
Ga0099822_10850151	3300006943	Root Nodules	MLDGDKKLFMTITLNFYIVVNKIYLYNYSEKNYSMIDNELQNKK*
Ga0099822_10896601	3300006943	Root Nodules	MTITLNFYVVVEKCYLYNCSEKDYSMIDNELENKK*
Ga0099822_10914161	3300006943	Root Nodules	MLDGDKKILMTITLNFYIVVNKSYVYNYSEKNYSMIDNELKNKK*
Ga0099822_10946791	3300006943	Root Nodules	MLDGNKKIFMTITLNFYIVVNKSYLYNYSEKNYSMIDNELENKK*
Ga0099822_11002861	3300006943	Root Nodules	MLDGDKKIFMTITLNFYVVVNKSYLYNYSEKNYNMINNEIENKK*
Ga0099822_11041891	3300006943	Root Nodules	MLDGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMI
Ga0099823_10004309	3300006944	Root Nodules	MLDGDKKIFMAITLNFYIVVIKSYLYNYIDGYGMIDNELENKK*
Ga0099823_100547813	3300006944	Root Nodules	MTITLNFYIVVNKSYLYNYHEQNSMIDNELENKK*
Ga0099823_10159201	3300006944	Root Nodules	MFDGDKKIFMIITLNFYIVVNKSTIIGKNYNMIDNELENKK*
Ga0099823_10170972	3300006944	Root Nodules	MLDVDKNNIHAITLNFYIVVNKSYLYNYIVKKYSMIDNELENKK*
Ga0099823_10252428	3300006944	Root Nodules	DGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMIDNELENKK*
Ga0099823_10311396	3300006944	Root Nodules	MTITLNFYIVVNKSYLYNYSEKDYSMIDNELENRK*
Ga0099823_10336531	3300006944	Root Nodules	KKIFMTITLNFYIVVNKSYLYNYSEKNYSMIDNELEKKIR*
Ga0099823_10364148	3300006944	Root Nodules	MLDGDKKIFMTITLNFHIVVNQSYLYNYSKKITNMIDNELEKQDIHVVPN*
Ga0099823_10513135	3300006944	Root Nodules	MLDGDKKNILAITLNFYIVVNKSCLYNYSEKYSMIDNKLEIRK*
Ga0099823_10533013	3300006944	Root Nodules	MLNGDRKYTKITLNFYIVVNKSYLYNYSENMIDNELENKK*
Ga0099823_10552912	3300006944	Root Nodules	LVGDKKKIIAITLNFYIVVNKSYLYNYSEKIMIDNELEIKSN*
Ga0099823_10597534	3300006944	Root Nodules	MLDGDRKIFMTITLNFYIVVNKDIYTIIIKKYSMIDNELKNKKI
Ga0099823_10644684	3300006944	Root Nodules	MLDGDKKIFMTITLNFYIIVNKVIYTIKMKRLSMIDNKLENKK*
Ga0099823_10750621	3300006944	Root Nodules	MTITLNFYIVVNKSYLYNYSEKHSTIDNKLENKK*
Ga0214544_100079030	3300021320	Root Nodules	MLDSDKKIFMTITLHFYFVVNKSYLYNYSEKNYIMIDNELENKK
Ga0214544_100104622	3300021320	Root Nodules	MLDGDTKIFMTITLNFYIVVNKSYLYNYSEKNYSMIDNELENKK
Ga0214544_100166919	3300021320	Root Nodules	MLDGDKKLFMTITLNFYIVVNKIYLYNYSEKNYSMIDNELQNKK
Ga0214544_10016711	3300021320	Root Nodules	MLDGDKKIFMTITLNFYVVVNKSYLYNYSEKNYNMINNEIENKK
Ga0214544_100174518	3300021320	Root Nodules	MLNGDKKTFMTITLHFYIIVNKNYLYNYSEKKYSMIDNELEN
Ga0214544_100177816	3300021320	Root Nodules	MLDGDKNIFMDITLNLYTIVNKSYLYNYSEKNYSMIDNELENKK
Ga0214544_100228721	3300021320	Root Nodules	MLDGDKKIFMTITLIFYIVVNKSYLYNYSKKNYSMIDNELENKK
Ga0214544_10024001	3300021320	Root Nodules	MLDGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMIDNKLENKK
Ga0214544_100291524	3300021320	Root Nodules	MLDGDKKIFMAITLNFYIVVNKIYLYNYGEKNYSMIDNELENKK
Ga0214544_100319115	3300021320	Root Nodules	MLKGDKKIFMSITSDFYIVVNKSYLYNYTEKKYSMIDNELKNKK
Ga0214544_10035739	3300021320	Root Nodules	MIITLNFYIVVNKSYLYNYCEKNYNIVDNELKNKK
Ga0214544_10036166	3300021320	Root Nodules	MLDGDKKIFMAITLNFYIVVNKSYLYNYSEKNYSMTDNELENKK
Ga0214544_10076327	3300021320	Root Nodules	MLDDDKKIFMAITLNFDIVVNKSYLYNYTEKLQYDXYNELENKK
Ga0214544_10090998	3300021320	Root Nodules	MDIVFFELQYMLDGDKKIFMTITLNFYIVVNKSYLYNYSEKINYSMIDNKLENKK
Ga0214544_10097847	3300021320	Root Nodules	MLDGDNKIFMTIKLNFYIILNKSYLYNYSEKNYSMIDNELKNKKNN
Ga0214544_100981921	3300021320	Root Nodules	TSIMLDGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMIYNELENKK
Ga0214544_10114851	3300021320	Root Nodules	MLDGDKKLFMTITLNFYIVVNKSYLYNYSEKNYSIIDNELENKK
Ga0214544_10117192	3300021320	Root Nodules	MLDGDKKIFMTITLNFYIVVNKSYLYKXENYSMIDNDFENKKIIR
Ga0214544_101228414	3300021320	Root Nodules	MLDGDIPIFTEIILNFYIVVNKSYLYNYSEKNYSMIDNKLENKK
Ga0214544_10124891	3300021320	Root Nodules	MLDGDKKIFMAITLNFYIVVNKSYLYNYSEKINYSMIDNDLKNKIKKNR
Ga0214544_10138456	3300021320	Root Nodules	MAIKLNFYIVVKKSYLYNYSEKNYSMMNNELENKK
Ga0214544_10139573	3300021320	Root Nodules	MLDGDKKIFMTITLNFYIVVNKSYLYNYSEKNYSMIDNELEKKIR
Ga0214544_10152772	3300021320	Root Nodules	MLDGDKKLFMSITLNFYVVINKNYLYNKKINYSMIDNELENKK
Ga0214544_10193471	3300021320	Root Nodules	MLDGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMIDNELENKK
Ga0214544_10209703	3300021320	Root Nodules	MLDGDKIIFMAITLNFYIVVNKSYLYYYNEKNYSMIDNELENKK
Ga0214544_10222481	3300021320	Root Nodules	MLDGDKKIFMTITLNFYIGINKSYLYNYSENYNMIDNELENKNN
Ga0214544_10234571	3300021320	Root Nodules	MLDVDKNIFMTITLNFYIVVNKSYLYNYSEKNYNMVDNELENKKITR
Ga0214544_10263961	3300021320	Root Nodules	MTITLNFYIVVNKSYLYNYSEKNYSMIDNELENKK
Ga0214544_10271241	3300021320	Root Nodules	MTITLNFYIVVNKSYLYNYSEKNYNMIDNELEKKK
Ga0214542_10074801	3300021321	Root Nodules	MLDGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMIYNELENKK
Ga0214542_10194654	3300021321	Root Nodules	MLDGNKKILMTITLNFYIVVNKSYLYNYSEKNYSMIDNELENKK
Ga0214542_10571691	3300021321	Root Nodules	MLDGNKKIFMTITLNFYIVVNKSYLYNYSEKNYSMIDNELENKK
Ga0214545_10047131	3300021324	Root Nodules	LDGDKKIFMAITLNFYIVVNKSYLYNYSEKYYSMINNELENKNN
Ga0214545_10240901	3300021324	Root Nodules	MLDGDKKIFMTITLNFYIVVNKIYLYNYSEKNYSMIDNELDNKK
Ga0214543_10138111	3300021327	Root Nodules	MTIQLNFYIVVNKSYLYNYSEKNYSMIDNELENKK
Ga0209389_10339661	3300027296	Root Nodules	MVIKKIFMTITLIFDIVVNKSYLYNYSEKNYIMIDNEL
Ga0209389_10443724	3300027296	Root Nodules	KKIFMTITLNFYIVVNKSYLYNYSEKNYSMIDNELEKKIR
Ga0209389_10582512	3300027296	Root Nodules	FXTSIMLDGNKKIFMTITLNFYIVVNKSYLYNYSEKNYSMIDNELENKK
Ga0209389_11235461	3300027296	Root Nodules	ILVGDKKKIIAITLNFYIVVNKSYLYNYSEKIMIDNELEIKSN
Ga0209589_10303142	3300027357	Root Nodules	MLDDDKKIFMAITLNFYIVVNKNYLYNYSEKNLSMIVMS