Scaffold Ga0099822_1003927

Overview

Basic Information

• Taxon OID: 3300006943
• Scaffold ID: Ga0099822_1003927
• Source Dataset Name: Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19231
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (33.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: California, USA
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044323	Metagenome	154	Y
F055472	Metagenome	138	Y
F079668	Metagenome	115	Y
F089948	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099822_100392746	F089948	AGGAGG	MRGGGMRSACRASSRMRDRAIIRGVYLVKRGWRGSRGRVSGQGGCGVGLAVVAA*
Ga0099822_100392747	F055472	GGAGG	VVESMGVAGSRGMFISTNEAAKVTSTDQFFYLILECFTIFCRVAMIAVVATILGHIIIRRSGCHAWWRDEVSL*
Ga0099822_100392749	F044323	AGGA	VDGFGLCSITKHSVKVDVAAGGNLFAREAIDWFVIWDHGRIRELEFLIGDPVENVNRATLVDEHFFNGVLFNFNSDDHGVVLLVVEVVKVVVCEDDGRHAVSVMGMSNMVDGLNMVEVFLSGQKGGSSTSEAIRDGVDSAT*
Ga0099822_100392751	F079668	AGCAGG	MDNFWDATRRSTPGKSAADQAKRSVLLTRIGVIMARSLEFKLVPKLMEWPLGSSRGEVSSTGSRRTSRSTLESRSSPDRAMPEPGGRSMWLVCCMGSCGRRLAM*