Scaffold Ga0070746_10001446

Overview

Basic Information

• Taxon OID: 3300006919
• Scaffold ID: Ga0070746_10001446
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14190
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (67.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020626	Metagenome	223	Y
F057429	Metagenome	136	Y
F104031	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070746_1000144612	F104031	AGGAG	MRKVWASEEIKLAKELKKKYSASQVGLYFGVTKNSIIGLLYKEKLKDGYVPAPDSKYTVRKNL*
Ga0070746_1000144622	F020626	GGTGG	MSVIKEVSVHDELKRARDEFYDAMFEGDEERMLAANNAVGYYESMGGIACPEYPGF*
Ga0070746_100014468	F057429	GAG	MNARVSVEYDKKTVRQGPEFLCSECDTWFKKLVYWTSKKFNPDQKYQMVFLCGPKCATEKYERQNK*