Scaffold Ga0070750_10000818

Overview

Basic Information

• Taxon OID: 3300006916
• Scaffold ID: Ga0070750_10000818
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17313
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F037986	Metagenome / Metatranscriptome	167	N
F047377	Metagenome / Metatranscriptome	150	Y
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070750_1000081811	F050011	N/A	MNSSLELFSEYIKPYLLQNVAICTDRKIIRKGKLRIFQIKQHYAKLTLEDEVRTRVYEIPYPFNITTDGRKTTFCYKLNEFLNVGDLQLQVKFLDSTKKSKIYNENLYIMPLEDVDL*
Ga0070750_1000081812	F015734	N/A	MIIQRAALDSLLLNNVCEIRFVRRRPRAGDGPTRRMLCTKSYDLLNSVNGRTTLNYAPPRGPKKVNEAADNVLVVWDILMQDYRTISMNSCDLIQQIPVNEFWEYFNENIYPMSPEQKYNFMNS*
Ga0070750_1000081813	F019756	N/A	MAQRSIDTLAPQKHLIDLSTHSEGDVGLTDDFELTMIFDDILLVEYVDENDTGEIQRNGIFVPTNALTKAWRKAKVVLAGPKVEYTKPGDVVIFPNNLGVTVANIDVNGVKVKKGIFLNEDRLFGICKLKDDNSKSSS*
Ga0070750_1000081814	F074154	N/A	MNFFQLQNKLFYSDKRKKAEYLDSEGEQAFVPFLLNRWLSMYSKETVGFVNETLNKYCGIFDTDKQKTYRFYFNLIPRLKFKRISYVKKIKKDKDKQDEIDTLKMIAKNKNISVRELEMYKNLLD*
Ga0070750_100008182	F037986	N/A	MNKELLPTELQDVLTEESVEAIETALKEKVELSVEAALASQDELYAEKLETLISQIDKDHTAKMQKIVEAVDKNNAAKLGNVIKKYETELNESASKFKETLVESISNYLEEYIDEAIPTASIEEATRNNTAMTVLNNLRSTLAVDSSLMSESVKTAIVEGKNEMDQLRAEIAELKKANETLTENYNQAKSAAFLENRCAKFSEKKAAYLKKVLSDKSPRFIEENFEYTARLFDRKEKEQLEVIREEAISNRTVKADAPKTVVEEKAKPSVPTNPYLEGLDMMK*
Ga0070750_100008183	F047377	N/A	MSEENKEMSTKDKIIKFIDAISGENYATANKYLQSAVQDKIEARIRQAAEKPLF*