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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006893 Open in IMG/M |
| Scaffold ID | Ga0073928_10014226 Open in IMG/M |
| Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8816 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000262 | Metagenome / Metatranscriptome | 1428 | Y |
| F033169 | Metagenome / Metatranscriptome | 178 | Y |
| F094473 | Metagenome / Metatranscriptome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0073928_100142263 | F094473 | AGGA | MRFNRVPPLVKQIMTGLRYRYSSLNNIHYEAVWTDEQCERRCQHRHQMLTDAAACGLYRASSWYVLAVERDEPRQLTTAESQIVNNFRFTEERVKFKSQSV* |
| Ga0073928_100142265 | F033169 | AGGAGG | MKMRISALLVFVLVVTLVPATLPQTESTPTIYTYVSQFQVPRANWAAYSEDSEKSLIPVLEKSLADGSIVSWSTSETVVHTSDGYTHGAAWSSNTIAGLLKVLDEIRKSAPRPGQIAATKHEDLLLQSRMYHNGTGEPTYLRGVCSLAKPDKPENYTAMLKKLLFPTFEEQLKKGVTTYYSLDEQYVNTSAPSTRCLIIGYPNAESIDKWATAINTTMSKWSSAEREEFAAASVPDSRRDFLARITHSGHK* |
| Ga0073928_100142267 | F000262 | N/A | MNHLRNICCVGIALVAFLVVACNGSSYGIFQPTPEDLCKCLPLEPDIADYRHIAKHVPISNISAQEIDVATILSWTQDPIMPPDAPRTGRENEVFHVATAYLQTASVNGVDCDVTMEISSTPDKNAARVVVETPVDSEYCSARQSIQAQLKQHNFRLDSQHGGELPQALPAQILGMAFEDFEHNRGSAQVATVWELHPAIVTLQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |