Metagenome / Metatranscriptome Family F094473

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094473
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	94 residues
Representative Sequence	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRQLTTAENKIVNDFRFASRKTKV
Number of Associated Samples	57
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.36 %
% of genes near scaffold ends (potentially truncated)	31.13 %
% of genes from short scaffolds (< 2000 bps)	63.21 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.491 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (44.340 % of family members)
Environment Ontology (ENVO)	Unclassified (36.792 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.868 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.87% β-sheet: 18.55% Coil/Unstructured: 47.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01931	NTPase_I-T	8.49
PF00072	Response_reg	6.60
PF02954	HTH_8	4.72
PF08241	Methyltransf_11	4.72
PF03169	OPT	2.83
PF02687	FtsX	1.89
PF12704	MacB_PCD	1.89
PF00069	Pkinase	1.89
PF13545	HTH_Crp_2	1.89
PF11695	DUF3291	0.94
PF05724	TPMT	0.94
PF04185	Phosphoesterase	0.94
PF13649	Methyltransf_25	0.94
PF08352	oligo_HPY	0.94
PF00265	TK	0.94
PF00691	OmpA	0.94
PF00990	GGDEF	0.94
PF00224	PK	0.94
PF02321	OEP	0.94
PF02887	PK_C	0.94
PF00563	EAL	0.94
PF04389	Peptidase_M28	0.94
PF00389	2-Hacid_dh	0.94
PF01494	FAD_binding_3	0.94
PF01555	N6_N4_Mtase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1986	Non-canonical (house-cleaning) NTP pyrophosphatase, all-alpha NTP-PPase family	Defense mechanisms [V]	8.49
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.55
COG1297	Predicted oligopeptide transporter, OPT family	General function prediction only [R]	2.83
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	1.89
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.89
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.89
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.94
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.94
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.94
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.94
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.94
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.94
COG1435	Thymidine kinase	Nucleotide transport and metabolism [F]	0.94
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.94
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.94
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.94
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.94
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.13 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.49 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.72 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.72 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	3.77 %
Chlorobi	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.72 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	3.77 %
unclassified Chlorobiota	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.72 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	3.77 %
Chlorobi bacterium OLB7	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobi bacterium OLB7	1.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10060342	All Organisms → cellular organisms → Bacteria → Acidobacteria	961	Open in IMG/M
3300001593\|JGI12635J15846_10003160	All Organisms → cellular organisms → Bacteria	14369	Open in IMG/M
3300001593\|JGI12635J15846_10005676	All Organisms → cellular organisms → Bacteria → Acidobacteria	10757	Open in IMG/M
3300001593\|JGI12635J15846_10025176	All Organisms → cellular organisms → Bacteria	4816	Open in IMG/M
3300001593\|JGI12635J15846_10199354	Not Available	1325	Open in IMG/M
3300001593\|JGI12635J15846_10389744	Not Available	843	Open in IMG/M
3300001661\|JGI12053J15887_10001854	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10055	Open in IMG/M
3300001661\|JGI12053J15887_10628788	Not Available	510	Open in IMG/M
3300002245\|JGIcombinedJ26739_100251077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	1657	Open in IMG/M
3300002245\|JGIcombinedJ26739_100549516	All Organisms → cellular organisms → Bacteria → Acidobacteria	1032	Open in IMG/M
3300002245\|JGIcombinedJ26739_100574964	All Organisms → cellular organisms → Bacteria → Acidobacteria	1004	Open in IMG/M
3300002245\|JGIcombinedJ26739_100859586	Not Available	788	Open in IMG/M
3300002245\|JGIcombinedJ26739_100949489	Not Available	743	Open in IMG/M
3300002245\|JGIcombinedJ26739_101299248	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300002245\|JGIcombinedJ26739_101807463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300005434\|Ga0070709_10884026	Not Available	706	Open in IMG/M
3300006163\|Ga0070715_10245749	All Organisms → cellular organisms → Bacteria → Acidobacteria	933	Open in IMG/M
3300006173\|Ga0070716_100903312	Not Available	692	Open in IMG/M
3300006175\|Ga0070712_100470223	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300006893\|Ga0073928_10001202	All Organisms → cellular organisms → Bacteria	51411	Open in IMG/M
3300006893\|Ga0073928_10011157	All Organisms → cellular organisms → Bacteria	10524	Open in IMG/M
3300006893\|Ga0073928_10014226	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8816	Open in IMG/M
3300006893\|Ga0073928_10067820	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobi bacterium OLB7	3112	Open in IMG/M
3300006893\|Ga0073928_10067939	All Organisms → cellular organisms → Bacteria	3109	Open in IMG/M
3300006893\|Ga0073928_10883443	Not Available	613	Open in IMG/M
3300010866\|Ga0126344_1252471	Not Available	590	Open in IMG/M
3300013832\|Ga0120132_1013793	All Organisms → cellular organisms → Bacteria → Acidobacteria	1366	Open in IMG/M
3300014501\|Ga0182024_10021664	All Organisms → cellular organisms → Bacteria → Acidobacteria	11646	Open in IMG/M
3300015193\|Ga0167668_1014270	All Organisms → cellular organisms → Bacteria → Acidobacteria	1787	Open in IMG/M
3300019887\|Ga0193729_1002638	All Organisms → cellular organisms → Bacteria	8903	Open in IMG/M
3300019887\|Ga0193729_1010755	All Organisms → cellular organisms → Bacteria	4123	Open in IMG/M
3300019887\|Ga0193729_1019742	All Organisms → cellular organisms → Bacteria → Acidobacteria	2932	Open in IMG/M
3300020034\|Ga0193753_10394122	Not Available	557	Open in IMG/M
3300020581\|Ga0210399_10516395	Not Available	992	Open in IMG/M
3300020583\|Ga0210401_10052054	All Organisms → cellular organisms → Bacteria	3864	Open in IMG/M
3300020583\|Ga0210401_10673636	Not Available	895	Open in IMG/M
3300021088\|Ga0210404_10276625	Not Available	919	Open in IMG/M
3300021168\|Ga0210406_10232731	All Organisms → cellular organisms → Bacteria → Acidobacteria	1518	Open in IMG/M
3300021170\|Ga0210400_10619872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300021171\|Ga0210405_10002817	All Organisms → cellular organisms → Bacteria	17662	Open in IMG/M
3300021171\|Ga0210405_10008139	All Organisms → cellular organisms → Bacteria	9120	Open in IMG/M
3300021171\|Ga0210405_10084979	All Organisms → cellular organisms → Bacteria	2494	Open in IMG/M
3300021171\|Ga0210405_11374704	Not Available	515	Open in IMG/M
3300021180\|Ga0210396_10219345	All Organisms → cellular organisms → Bacteria	1696	Open in IMG/M
3300021180\|Ga0210396_10887473	Not Available	761	Open in IMG/M
3300021402\|Ga0210385_10405708	Not Available	1024	Open in IMG/M
3300021402\|Ga0210385_11166628	Not Available	591	Open in IMG/M
3300021420\|Ga0210394_11630153	Not Available	542	Open in IMG/M
3300021432\|Ga0210384_10010520	All Organisms → cellular organisms → Bacteria	9429	Open in IMG/M
3300021433\|Ga0210391_11399480	Not Available	538	Open in IMG/M
3300021479\|Ga0210410_10660444	Not Available	925	Open in IMG/M
3300021559\|Ga0210409_10002528	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	21613	Open in IMG/M
3300021559\|Ga0210409_10768817	Not Available	835	Open in IMG/M
3300021559\|Ga0210409_10944867	Not Available	736	Open in IMG/M
3300022557\|Ga0212123_10009939	All Organisms → cellular organisms → Bacteria	13662	Open in IMG/M
3300022557\|Ga0212123_10013382	All Organisms → cellular organisms → Bacteria	10727	Open in IMG/M
3300022557\|Ga0212123_10054471	All Organisms → cellular organisms → Bacteria	3621	Open in IMG/M
3300022557\|Ga0212123_10105985	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobi bacterium OLB7	2279	Open in IMG/M
3300023056\|Ga0233357_1041846	Not Available	584	Open in IMG/M
3300025906\|Ga0207699_10770468	Not Available	706	Open in IMG/M
3300025915\|Ga0207693_11387314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300026359\|Ga0257163_1072156	Not Available	557	Open in IMG/M
3300027439\|Ga0209332_1007474	All Organisms → cellular organisms → Bacteria → Acidobacteria	2222	Open in IMG/M
3300027521\|Ga0209524_1061852	Not Available	787	Open in IMG/M
3300027535\|Ga0209734_1000224	All Organisms → cellular organisms → Bacteria → Acidobacteria	7563	Open in IMG/M
3300027535\|Ga0209734_1000965	All Organisms → cellular organisms → Bacteria	4665	Open in IMG/M
3300027546\|Ga0208984_1066756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	773	Open in IMG/M
3300027562\|Ga0209735_1147566	Not Available	511	Open in IMG/M
3300027565\|Ga0209219_1019683	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300027565\|Ga0209219_1135335	Not Available	597	Open in IMG/M
3300027583\|Ga0209527_1097090	Not Available	661	Open in IMG/M
3300027610\|Ga0209528_1046528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	961	Open in IMG/M
3300027629\|Ga0209422_1001167	All Organisms → cellular organisms → Bacteria → Acidobacteria	6294	Open in IMG/M
3300027629\|Ga0209422_1023808	All Organisms → cellular organisms → Bacteria → Acidobacteria	1518	Open in IMG/M
3300027633\|Ga0208988_1108943	Not Available	684	Open in IMG/M
3300027635\|Ga0209625_1152908	Not Available	515	Open in IMG/M
3300027651\|Ga0209217_1063485	All Organisms → cellular organisms → Bacteria → Acidobacteria	1094	Open in IMG/M
3300027660\|Ga0209736_1055172	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300027660\|Ga0209736_1081035	Not Available	893	Open in IMG/M
3300027667\|Ga0209009_1007783	All Organisms → cellular organisms → Bacteria → Acidobacteria	2561	Open in IMG/M
3300027667\|Ga0209009_1143356	Not Available	607	Open in IMG/M
3300027678\|Ga0209011_1005624	All Organisms → cellular organisms → Bacteria → Acidobacteria	4308	Open in IMG/M
3300027727\|Ga0209328_10012644	Not Available	2553	Open in IMG/M
3300027908\|Ga0209006_10018738	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6279	Open in IMG/M
3300027908\|Ga0209006_10047779	All Organisms → cellular organisms → Bacteria	3850	Open in IMG/M
3300027908\|Ga0209006_10167442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1922	Open in IMG/M
3300028047\|Ga0209526_10005170	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8900	Open in IMG/M
3300028047\|Ga0209526_10014032	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5542	Open in IMG/M
3300028047\|Ga0209526_10017918	All Organisms → cellular organisms → Bacteria → Acidobacteria	4922	Open in IMG/M
3300028047\|Ga0209526_10525354	Not Available	768	Open in IMG/M
3300028047\|Ga0209526_10546319	Not Available	749	Open in IMG/M
3300028047\|Ga0209526_10562209	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300028047\|Ga0209526_10625223	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	687	Open in IMG/M
3300028047\|Ga0209526_10785746	Not Available	591	Open in IMG/M
3300030991\|Ga0073994_12009275	All Organisms → cellular organisms → Bacteria → Acidobacteria	1140	Open in IMG/M
3300031231\|Ga0170824_110322703	Not Available	1242	Open in IMG/M
3300031715\|Ga0307476_11113361	Not Available	580	Open in IMG/M
3300031718\|Ga0307474_10068124	All Organisms → cellular organisms → Bacteria	2641	Open in IMG/M
3300031718\|Ga0307474_11327273	Not Available	568	Open in IMG/M
3300031718\|Ga0307474_11463983	Not Available	538	Open in IMG/M
3300031754\|Ga0307475_10007199	All Organisms → cellular organisms → Bacteria	7163	Open in IMG/M
3300031754\|Ga0307475_10123325	Not Available	2042	Open in IMG/M
3300031754\|Ga0307475_10244504	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300031754\|Ga0307475_10719202	Not Available	795	Open in IMG/M
3300031962\|Ga0307479_10006719	All Organisms → cellular organisms → Bacteria	10582	Open in IMG/M
3300031962\|Ga0307479_10724150	Not Available	973	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.57%
Aquatic	Environmental → Aquatic	9.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.57%
Thermal Springs	Environmental → Aquatic → Thermal Springs	9.43%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	50.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.62%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	9.43%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	44.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.02%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	9.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.66%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	44.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.64%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	9.43%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.77%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.94%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_100603422	3300001471	Forest Soil	MEPNLVGPDVPAVQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYLLAIEGGELRELT
JGI12635J15846_100031602	3300001593	Forest Soil	MRYAALNNIHYEAAWTDSWCDCRCMHAHQTLSDAAKCGLPRGAGWYVLAIEDGELRELTTAEDKLVNDFRFASWKTES*
JGI12635J15846_1000567611	3300001593	Forest Soil	MEPNLVRPLVPSPQFLNDIMSGLRMRYASLNNIHYEAAWTDSWCDCRGMHAHQTLSDAARCGLPRAAGWYVLAVEHGEPRQLTAAEDNIVNDLRVAAWKTNS*
JGI12635J15846_100251765	3300001593	Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHFEAAWTDSQGDCRCRHKHHMLSDAARCGLHRAAGWYVLAVERGEPRQLTTAENKIVNDFRFASRKIKV*
JGI12635J15846_101993541	3300001593	Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWADSRGDCRCQHKHQMLSDAARCGSTRAAGWYVLAVERGEPRQLTTAEDKIVN
JGI12635J15846_103897441	3300001593	Forest Soil	MEANLIGRYVPSAQLLNDIMAGLRMRYASLNNIHYEAAWTDSWCDCRCMHAHQTLSDAAQCGLPRAAGWYVLAIEGGELRELT
JGI12053J15887_100018544	3300001661	Forest Soil	MXPDRMPPLVKQIMTGLRYRYASLNSTHYEAAWTDSQGXCRCMHKHKMLSDAARCGLPRPAGWYVLAVERGEPRQLTTAENKIVDDFRFASRKTKV*
JGI12053J15887_106287881	3300001661	Forest Soil	MEPNLVRPHGPSTQLLNDIMSGLRMRYASLNNIHYEAAWTDSWCECRCMHAHQTLSDAARCGLPRAAGWYVLAVERGEPRQLTTAEDKVVNDLRVASWETKS*
JGIcombinedJ26739_1002510773	3300002245	Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCMHKHKMLSDAARCGLLRPAGWYVLAVERGEPRQLTTAENKIVDDFRFASRKTKV*
JGIcombinedJ26739_1005495161	3300002245	Forest Soil	MSPDRMPPLVKQIISGLRYRYASLNNTHYEVGWTDGRGDCRCRHKHQMLGDAARCGLPRAAGWYVLAVERGTPRQLTTAENKIVNDFRFASRKTKA*
JGIcombinedJ26739_1005749642	3300002245	Forest Soil	MEPNLVGPDVPAVQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKLVNDFRFAS
JGIcombinedJ26739_1008595862	3300002245	Forest Soil	MEPNLVRPHSPSTQLLNDIMSGLRMRYASLNNIHYEAAWTDSWCXCRCMHAHQTLSDAARCXLPRAAGWYVLAVEGGEPRQLTTAEDKIVNDLRVASWKTKS*
JGIcombinedJ26739_1009494892	3300002245	Forest Soil	MEQNLVHPRVPSPQLLDDIMSGLRMRYASLNNIHYEAAWTDSWCDCRCMHAHQTLTDAARCGLPRAAGWYVLAVERGEPRQLTTAEDKIVNDLRVASWKTTS*
JGIcombinedJ26739_1012992481	3300002245	Forest Soil	QLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKIVNDFRFASWKTKS*
JGIcombinedJ26739_1018074631	3300002245	Forest Soil	VGLRMRYASLNNIHYEAAWTDSWCDCRCMHAHQTLSDAAKCGLPRGAGWYVLAIEDGELRELTTAEDKLVNDFRFASWKTES*
Ga0070709_108840262	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRHLTTTENKIVNDFQFASRKTKV*
Ga0070715_102457493	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRHLTTSENKIVNDFQFASEKLKFKTNNFVGGAP
Ga0070716_1009033121	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRHLTTAENKIVNDFRFASIKTKV*
Ga0070712_1004702231	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MEPNLVAQHVPSAQLLNDIMVGLRMRYASLNNIHYEAVWTDSWCDCRCMHAHRTLNDAAKCGLPRGAGWYVLAIEGGEPRELTNAEEQIVNEFRLASWKTKS*
Ga0073928_1000120232	3300006893	Iron-Sulfur Acid Spring	MEPNFLGQHVPSAQLLNDIVVGLRMRYASLNNIHYEAAWTDSWCDCRCMHEHQTLGDAARGLLVGGLSDRSGELRKLTTAEDKIVNDFRFASWKTKP*
Ga0073928_100111572	3300006893	Iron-Sulfur Acid Spring	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRHLTTAENKIVNDYRFASRKTKV*
Ga0073928_100142263	3300006893	Iron-Sulfur Acid Spring	MRFNRVPPLVKQIMTGLRYRYSSLNNIHYEAVWTDEQCERRCQHRHQMLTDAAACGLYRASSWYVLAVERDEPRQLTTAESQIVNNFRFTEERVKFKSQSV*
Ga0073928_100678204	3300006893	Iron-Sulfur Acid Spring	MEPNLVGRHVPSAQLLNDIMVGLRTRYASLNNIHYEAVWTDSWCDCRCMHAHRTLNDAAKCGLPRGAGWYVLAIEGGEPRELTNAEAQIVNDFRFASWKANP*
Ga0073928_100679395	3300006893	Iron-Sulfur Acid Spring	MEPNLAGQHVPSAQLLNDIMVGLRMRYASLNNIHYEAVWTDSWCDCRCMHAHQTLNDAAKCGLPRGAGWYVLAMEGGEPRELTNAEAQIVNDFRFASWKANP*
Ga0073928_108834432	3300006893	Iron-Sulfur Acid Spring	PTQLLSDILVGLRMRYASLDNIHYEAAWTDSWCDCRCMHLHQTLSDAAQCGLPRGAGWYVLAIEDGELRELTTVEDKVVNEYRLASWKT*
Ga0126344_12524712	3300010866	Boreal Forest Soil	MRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKIVNDFRFASWKT*
Ga0120132_10137933	3300013832	Permafrost	MEPNFLGQQVPSAQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKIVNDFRFASWKTKS*
Ga0182024_1002166410	3300014501	Permafrost	MRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKTVNDFRFASWKTKS*
Ga0167668_10142702	3300015193	Glacier Forefield Soil	MEPHLVGHHVPSVQLINDIMSGLRARYASLNNIHYEAGWTDSWVHCRCFHKHPTLIDAAKCGMPQPGFYVLAVEHGEPRELTTSEDNIVNDFRFAPRENKS*
Ga0193729_10026388	3300019887	Soil	MEPNLVGQHVPSVQLLNDIMSGLRMRFAALNHIHYEAVWTDSWCDCRCMHAHQTLSEAAECGLPRGAGWYVLAVEGGEPRELTTAEEQIVNNFRFASWKTKS
Ga0193729_10107552	3300019887	Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDNQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRHLTTTENKIVNDFRFASRKTKV
Ga0193729_10197423	3300019887	Soil	MRFNRVPPLVKQIMTGLRYRYASLNNIHYEAVWTDGQCERRCQHRHQMLTDAAACGLYRASGWYVLAVERGEPRELTTAENKIVNNFRFTEERVKFKSQSV
Ga0193753_103941222	3300020034	Soil	MRFNRVPPLVKQIMTGLRYRYASLNNIHYEAVWTDGQCERRCQHRHQLLTDAAACGLYRASGWYVLAVERGEPRELTTAENKIVNNFRFTEERVKFKS
Ga0210399_105163952	3300020581	Soil	RYRYASLNNTHYEAAWTDSRGDCRCMHKHKMLSDAARCGLPRAAGWYILAVERGEPRQLTTAENKIVNDFRFAPRKTKP
Ga0210401_100520543	3300020583	Soil	MEPNLIGPHAPSVQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEAGELRELTTAEDKIVNDFRFASWKTKS
Ga0210401_106736361	3300020583	Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCGHKHQMLSDAARCGLPRPTGWYVLAVERGEPRQLTTAENKIVNDFRFASRKV
Ga0210404_102766251	3300021088	Soil	KRRYPVSSFCGKTEDDKQFIKGLLAMSPDRMPLLVKQIMTGLRYRYASLNNTHYEAAWTESRGDCRCMHKHKMLSDAARCGLPRAAGWYILAVERGEPRQLTTAENKIVNDFRFAPRKTK
Ga0210406_102327312	3300021168	Soil	MSPDRMPLLVKQIMTGLRYRYASLNNTHYEAAWTDSRGDCRCMHKHKMLSDAARCGLPRAAGWYILAVERGEPRQLTTAENKIVNDFRFAPRKTKP
Ga0210400_106198721	3300021170	Soil	RKASPLGGCMEPNLIGPRVPSVQLLNDIMVRLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTASEDKIVNDFRFASWKTKS
Ga0210405_1000281712	3300021171	Soil	MRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEAGELRELTTAEDKIVNDFRFASWKTKS
Ga0210405_100081392	3300021171	Soil	MEPNLTGPHVPSVRLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTASEDKIVNDFRFASWKTKS
Ga0210405_100849791	3300021171	Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRQLTTTENKIVNDFRFASRKV
Ga0210405_113747042	3300021171	Soil	LGVRMEPNLLRPRVPPAQLLNDIMMGLRMRYAALNHIHYEAAWTDSWCDCRCMHSHQTLSDAARCGLPRAAGWYVFAVERGKPRQLTAAEDKIVNDLRVASWKTKF
Ga0210396_102193452	3300021180	Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRQLTTTENKIVNDFRFASRKTKV
Ga0210396_108874731	3300021180	Soil	MRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAHCGLPRAAGWYVLAIEGGELRELTAAEDKIVNDFRFASWKTKS
Ga0210385_104057083	3300021402	Soil	LVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRQLTTTENKIVNDFRFASRKTKV
Ga0210385_111666281	3300021402	Soil	MEPNLIGPHVPSVQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEAGELRELTTAEDKIVNDFRFASWKTKS
Ga0210394_116301531	3300021420	Soil	MPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCGHKHQMLSDAARCGLPRPTGWYVLAVERGEPRQLTTAENKIVNDFRFASRKV
Ga0210384_100105209	3300021432	Soil	MRYAALNHIHYEAAWTDSWCDCRCMHSHQTLSDAARCGLPRAAGWYVFAVERGKPRQLTAAEDKIVNDLRVASWKTKF
Ga0210391_113994801	3300021433	Soil	PNLIGPHVPSVQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAHCGLPRAAGWYVLAIEGGELRELTAAEDKIVNDFRFASWKTKS
Ga0210410_106604442	3300021479	Soil	MEPNLIGPHVPSVQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAHCGLPRAAGWYVLAIEGGELRELTAAEDKIVNDFRFASWKTKS
Ga0210409_1000252814	3300021559	Soil	MRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTASEDKIVNDFRFASWKTKS
Ga0210409_107688171	3300021559	Soil	DRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRQLTTTENKIVNDFRFASRKTKV
Ga0210409_109448673	3300021559	Soil	RSPSLGVRMEPNLQRPRVPPAQLLNDIMMGLRMRYAALNHIHYEAAWTDSWCDCRCMHSHQTLSDAARCGLPRAAGWYVFAVERGKPRQLTAAEDKIVNDLRVASWKTKF
Ga0212123_100099398	3300022557	Iron-Sulfur Acid Spring	MRFNRVPPLVKQIMTGLRYRYSSLNNIHYEAVWTDEQCERRCQHRHQMLTDAAACGLYRASSWYVLAVERDEPRQLTTAESQIVNNFRFTEERVKFKSQSV
Ga0212123_1001338211	3300022557	Iron-Sulfur Acid Spring	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRHLTTAENKIVNDYRFASRKTKV
Ga0212123_100544713	3300022557	Iron-Sulfur Acid Spring	MEPNLVGRHVPSAQLLNDIMVGLRTRYASLNNIHYEAVWTDSWCDCRCMHAHRTLNDAAKCGLPRGAGWYVLAIEGGEPRELTNAEAQIVNDFRFASWKANP
Ga0212123_101059853	3300022557	Iron-Sulfur Acid Spring	MEPNLAGQHVPSAQLLNDIMVGLRMRYASLNNIHYEAVWTDSWCDCRCMHAHQTLNDAAKCGLPRGAGWYVLAMEGGEPRELTNAEAQIVNDFRFASWKANP
Ga0233357_10418461	3300023056	Soil	MSMSPDRMPPLVKQIISGLRYRYASLNNTHYEAAWTDRQGDCRCRHKHQMLGDAARCGLPRAAGWYVLAVERGTPRQLTTAEDKIVNDFRFASRKTEV
Ga0207699_107704682	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRHLTTTENKIVNDFQFASRKTKV
Ga0207693_113873142	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LVAQHVPSAQLLNDIMVGLRMRYASLNNIHYEAVWTDSWCDCRCMHAHRTLNDAAKCGLPRGAGWYVLAIEGGEPRELTNAEEQIVNEFRLASWKTKS
Ga0257163_10721562	3300026359	Soil	MLPDRMPPLVKQIMTGLRYRYASLNSTHYEAAWTDSQGDCRCMHKHKMLSDAARCGLTRPAGWYVLAVERGEPRQLTTAENKILDDFRFASRKTKV
Ga0209332_10074744	3300027439	Forest Soil	MEPNLIGQYVPSAQLLNDIMVGLRMRYAALNNIHYEAAWTDSWCDCRCMHAHQTLSDAAKCGLPRGAGWYVLAIEDGELRELTTAEDKLVNDFRFASWKTES
Ga0209524_10618521	3300027521	Forest Soil	MEQNLVHPRVPSPQLLNDIMSGLRMRYASLNNIHYEAVWTDSWCDCRCMHAHQTLTDAARCGLPRAAGWYVLAVEGGEPRQLTTAEDKIVNDLRVASWETKS
Ga0209734_100022410	3300027535	Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHFEAAWTDSQGDCRCRHKHQMLSDAARCGLHRAAGWYVLAVERGEPRQLTTAENKIVNDFRFASRKIKV
Ga0209734_10009653	3300027535	Forest Soil	MEPNLVRPLVPSPQFLNDIMSGLRMRYASLNNIHYEAAWTDSWCDCRGMHAHQTLSDAARCGLPRAAGWYVLAVEHGEPRQLTAAEDNIVNDLRVAAWKTNS
Ga0208984_10667562	3300027546	Forest Soil	MLPDRMPPLVKQIMTGLRYRYASLNSTHYEAAWTDSWCECRCMHAHQTLSDAARCGLPRAAGWYVLAVERGEPRQLTTAEDKVVNDLRVAS
Ga0209735_11475661	3300027562	Forest Soil	WGASLPSLGGCMEPNLIGQYVPSAQLLNDIMVGLRMRYAALNNIHYEAAWTDSWCDCRCMHAHQTLSDAAKCGLPRGAGWYVLAIEDGELRELITSEDKIVNDFRFASWKTKS
Ga0209219_10196831	3300027565	Forest Soil	MEANLIGRYVPSAQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHAHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKIVNDFRFASWKTKS
Ga0209219_11353351	3300027565	Forest Soil	MEQNLVHPRVPSPQLLDDIMSGLRMRYASLNNIHYEAAWTDSWCDCRCMHAHQTLTDAARCGLPRAAGWYVLAVERGEPRQLTTVENKVVNDFRFASWKTES
Ga0209527_10970901	3300027583	Forest Soil	MVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKIVNDFRFASRKTKV
Ga0209528_10465281	3300027610	Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSWCDCRCMHAHQTLNDAARCGLPRAAGWYVLAVERGEPRQLTTAEDKIVNDLRVAS
Ga0209422_10011674	3300027629	Forest Soil	MRYASLNNIHYEAAWTDSWYDCRCMHKHQTLSDAAQCGLPRTAGWYVLAIEDGELRELITSEDKIVNDFRFASWKTKS
Ga0209422_10238082	3300027629	Forest Soil	MRYAALNNIHYEAAWTDSWCDCRCMHAHQTLSDAAKCGLPRGAGWYVLAIEDGELRELTTAEDKLVNDFRFASWKTES
Ga0208988_11089431	3300027633	Forest Soil	MEPNLVRPRGPSTQLLNDIMSGLRMRYASLNNIHYEAAWTDSWCECRCMHAHQTLSDAARCGLPRAAGWYVLAVERGEPRQLTTAEDKVVNDLRVASWETKS
Ga0209625_11529081	3300027635	Forest Soil	MEPNLIGQYVPSAQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHAHQTLSDAAKCGLPRGAGWYVLAIEDGELRELTTAEDKLVNDFRFASWKTES
Ga0209217_10634851	3300027651	Forest Soil	MSMSPDRMPPLVKQIISGLRYRYASLNNTHYEVGWTDGRGDCRCRHKHQMLGDAARCGLPRAAGWYVLAVERGTPRQLTTAENKIVNDFRFASRKTKA
Ga0209736_10551722	3300027660	Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHFEAAWTDSQGDCRCRHKHQMLSDAARCGLHRAAGWYVLAVERGEPRQLTTAEDKIVNDFRFGLAHGPAHAG
Ga0209736_10810351	3300027660	Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSRGDCRCMHKHQLLSDAARCGSTRAAGWYVLAVERGEPRQLTTAEDK
Ga0209009_10077832	3300027667	Forest Soil	MPDRIPPLVKQIMTGLRYRYACLNNTHYEVAWTDSHGDYRCRHKHQMLSDAARCGLHRAAGWYVLAVERGEPRPLTTAENKIMDDLRCASRKTKV
Ga0209009_11433561	3300027667	Forest Soil	MEPNLIGQYVPSAQLLNDIMVGLRMRYAALNNIHYEAAWTDSWCDCRCMHAHQTLSDAAKCGLPRGAGWYVLAIEDGELRELTTAEDKLVNDFRFASWKT
Ga0209011_10056247	3300027678	Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHFEAAWTDSQGDCRCRHKHHMLSDAARCGLHRAAGWYVLAVERGEPRQLTTAENKIVNDFRFASRKIKV
Ga0209328_100126441	3300027727	Forest Soil	MPPLVKQIMTGLRYRYASLNNTHYEVAWTDGRLDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRQLTTVENKIVNDFRFASRKTKV
Ga0209006_100187381	3300027908	Forest Soil	MEPNLVGPDVPAVQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKIVNDFRFASWKTKS
Ga0209006_100477794	3300027908	Forest Soil	NIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLSRAAGWYLLAIEGGELRELTTAEDKIVNDFRFASWKTKS
Ga0209006_101674422	3300027908	Forest Soil	MEPNLIGQYVPSAQLLNDLMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHAHQTLSDAAKCGRPRGAGWYVLAIEDGELRELTTAEDKLVNDFRFASWKTES
Ga0209526_100051707	3300028047	Forest Soil	MEQNLVHPRVPSPQLLDDIMSGLRMRYASLNNIHYEAAWTDSWCDCRCMHAHQTLTDAARCGLPRAAGWYVLAVERGEPRQLTTAEDKIVNDLRVASWKTTS
Ga0209526_100140324	3300028047	Forest Soil	MRYASLNNIHYEAAWTDSWCDCRCMHAHQTLSDAARCGLPRAAGWYVLAVERGEPRQLTTAEDKIVNDLRVASWETKS
Ga0209526_100179189	3300028047	Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCMHKHKMLSDAARCGLLRPAGWYVLAVERGEPRQLTTAENKIVDDFRFASRKTKV
Ga0209526_105253541	3300028047	Forest Soil	VAWTDGRLDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRQLTTVENKIVNDFRFASRKTKV
Ga0209526_105463192	3300028047	Forest Soil	MEANLIGRYVPSAQLLNDIMAGLRMRYASLNNIHYEAAWTDSWCDCRCMHAHQTLSDAARCGLPRAAGWYVLAVEGGSLRELTTAEDTIVNEIRFASWKTKS
Ga0209526_105622091	3300028047	Forest Soil	MEPNLIGPHVPSVQLLNDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHKHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKIVNDFRFASWKTKS
Ga0209526_106252231	3300028047	Forest Soil	MSMSPDRMPPLVKQIISGLRYRYASLNNTHYEVGWTDGRGDCRCRHKHQMLGDAARCGLPRAAGWYVLAVERGTPRQLTTAENKIVN
Ga0209526_107857461	3300028047	Forest Soil	MSHDRMPPLVKEIVTGLRYRYASLNNTHYEVAWTDSGGDCRCRHKHHMLSDAARCGLPRPAGWYVLAVERGEPRLLTTAE
Ga0073994_120092752	3300030991	Soil	SLNNIHYEAVWTDSWCDCRCMHAHQTLNDAAKCGLPRGAGWYVLAMEGGEPRELTNAEAQIVNDFRFASWKANP
Ga0170824_1103227033	3300031231	Forest Soil	MELTSVGQQRPPAQLLNDIMVGLRTRYASLNNIHYEAAWTDSWCDCRCMHQHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTASEDKIVSDFRFASWKTKS
Ga0307476_111133612	3300031715	Hardwood Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRHLTTAEDKI
Ga0307474_100681243	3300031718	Hardwood Forest Soil	MRFNRVPPLVKQIMTGLRYRYASLNNIHYEAVWTDGQCERRCQHRHQMLTDAAACGLYRASGWYVLAVERGEPRELTTAESKIVNNFRFTEERVKFKSQSV
Ga0307474_113272731	3300031718	Hardwood Forest Soil	NFLAQQVPSAKLLNDIMVGLRMRYASLNNVHYEAAWTDSWCDCRCMHEHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKIVNEIRFASWKTKS
Ga0307474_114639831	3300031718	Hardwood Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNTHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRQLTTAENKIVNDFRFASRKTKV
Ga0307475_100071998	3300031754	Hardwood Forest Soil	MSSDRMPPLVKQIMTGLRYRYASLNNTHYEAAWMDSRGNCRCMHKHQMLSDAARCGLTRAAGWYVLAVERGEPRQLTTAEDKIVDDYRFASRKTKA
Ga0307475_101233252	3300031754	Hardwood Forest Soil	MEPNFLAQQVPSAKLLNDIMVGLRMRYASLNNVHYEAAWTDSWCDCRCMHEHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKIVNEIRFASWKTKS
Ga0307475_102445042	3300031754	Hardwood Forest Soil	RYRYASLNNTHYEAAWTDSQGDYRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRQLTAAENKIVNDFRFASTKV
Ga0307475_107192021	3300031754	Hardwood Forest Soil	MEPNLVGDHVPSVRLLDDIMVGLRMRYASLNNIHYEAAWTDSWCDCRCMHAHQTLSDAAQCGLPRGARWYVLAVEGGKLRELTTAEDQIVNDFRFASWKTKS
Ga0307479_100067197	3300031962	Hardwood Forest Soil	MSPDRMPPLVKQIMTGLRYRYASLNNIHYEAAWTDSQGDCRCRHKHQMLSDAARCGLPRPAGWYVLAVERGEPRHLTTAENKIVDDFRFASRKV
Ga0307479_107241501	3300031962	Hardwood Forest Soil	GLRMRYASLNNVHYEAAWTDSWCDCRCMHEHQTLSDAAQCGLPRAAGWYVLAIEGGELRELTTAEDKIVNEIRFASWKTKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094473

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences