Scaffold Ga0073928_10000083

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000083
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 214632
• Total Scaffold Genes: 246
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 121 (49.19%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000116	Metagenome	2132	Y
F001662	Metagenome / Metatranscriptome	655	Y
F001737	Metagenome / Metatranscriptome	644	Y
F005437	Metagenome / Metatranscriptome	401	Y
F009633	Metagenome / Metatranscriptome	315	N
F011257	Metagenome	293	Y
F013578	Metagenome	270	Y
F037141	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000083101	F013578	N/A	MKIDFRLTTAAVIAAILISPIVARAGSRSHPLSEDAALELLQRTLKRDRVYEKRISLDCIAYGTEETTNTYFEFVLREIHNAKCAGDPETSPAIDRYRVYRHSGKIQQWGAAEDTWQPYKRAAN*
Ga0073928_10000083107	F000116	N/A	MPKHPETTISTATRQIRPPPLSQHLREFASRRDAWVVLARNMIPVVGIYVFGWSAAVAVFNYWFDGLTALTAIVAALVPRALRETQSGKDHVTLVGNVVRGVFVWLLLVGIVALPYWIVLIPLHDLLLGNELRRELAHSPALWFTFGSLAASHFWKAFRMGYDTMPDKELKQRARWDLYLLILRAIAMFFMAAHGLYFILVPLMALLLSYLEIWPERAIGAVFGDPSRLWEYDPGDPTSNKRLP*
Ga0073928_10000083116	F001662	GGCGG	VEGIPSEGVATKHIIAMKFSTEAIVAAVVAVVFVLLSFGAIAREQGEPARVGHNAQNAYVAASNANPSDTDVLGVY*
Ga0073928_10000083155	F005437	N/A	MKVLISSLMIATAVVTLIRAQEESASPTEEAKRYPEVPKQYEVGEDTISPDGRFGILYPVRDESSNEGPAFRNVLVRLKPYEVIKELDVDPAWKEIRGAPAAKWGGNQFVAIWRQMKWGNEDLVVYELVNDKVKREEKIWPEIVKYFDRDFHQRFLKNYPKESDSYTFVADTSDVKSFEFKDNKLLLNISAENKPNLAPGPVWSAELHGIWDLDKAKFDKVDFKPGEISVRKPED*
Ga0073928_10000083182	F001737	GAG	VKALAFVFVLCFFDGLMLRAEEVSSGKGAVQSIAGIPEGYEIGEKRLSPNGRFAILYPIRGDDTAELPPNLLVCLKRYSVLTRIGTEGGRWQGARDQPLAKWNGNSIVAIWIAARWGMKDLAVYEIEADEIKRIQPVWRRVWLLFDQDFRERFLSKYPDEKGSGVIFVSKGEGPDSKPELEFKGHKMLLSLFAENKPDLSVTPHWTASLHAVWNLDTAELEHVDFRPGPIELRPNY*
Ga0073928_10000083207	F009633	N/A	MLLGSLLIPWIVGRSSKQAAVADTRLKQALQVMATSNGVDATINKIETAFEGFEKDSLVIEQQDEFLRRREDLRKRVYELYAEFDSTAWWWGRNTYDQARILHLISPARLDKLNEHIGQYNNNLVETAHAIDIPWHAYLGTNAVTHGSGAKEIMPSLNKQLRTLQQQRSEIAGNMAALFQ
Ga0073928_10000083230	F037141	N/A	MKSEFRRDFAQQPFEEKIHEVGELISLSRRVKADASNDSDENTGFNGAELSESVLGRDWSSPEEDAAWSNL*
Ga0073928_1000008384	F011257	AGG	MRLPGLGWGGIAMEAGLGRKRLVSLRYLQLGKIRAAARVGCPF*