Scaffold Ga0073928_10000026

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000026
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 357278
• Total Scaffold Genes: 357
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 198 (55.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000940	Metagenome / Metatranscriptome	827	Y
F018457	Metagenome / Metatranscriptome	235	Y
F022842	Metagenome / Metatranscriptome	212	N
F058344	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000026102	F000940	AGAAGG	MKTKSVRRYTFLLVCVSISADAAHLLGANMRSFIESVRRKAPVVYVGSVKEVRMLQRTKFDIKAKAVVDIKAVARTQGSNPQQAIIEYSSYDDKTPMLEGGPQYQLRSGVWVIVFANSFDASIPPGYLVQGSRQELLQRVEALRDALSKMSPEQLKVNEITKDDRRVQISLYEKLSAFLRAAK*
Ga0073928_10000026139	F018457	N/A	MIVRQANDVTHRTPRLLHFALPIRPREGSITVRQVRNTGLGLLLLSAWFLLAGLIGILGHN*
Ga0073928_10000026304	F022842	GGAGG	MNKLNSAIAAVCITSVAVSWGGYAKDYLIENQRLEQSRNAIRIMELMQRSGVSPMPLQKPLTEIDPSKAPLEKL*
Ga0073928_1000002662	F058344	N/A	MVAGFYGSRRSAIELPGGVDDSSSHEKVDYSCFSALCSGDGAGFLREQFLR*