Scaffold Ga0079217_10000027

Overview

Basic Information

• Taxon OID: 3300006876
• Scaffold ID: Ga0079217_10000027
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25097
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001505	Metagenome	681	Y
F021790	Metagenome / Metatranscriptome	217	Y
F033848	Metagenome	176	Y
F053644	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079217_1000002717	F053644	AGG	MKGLRLYFDLKRPDPQGGGLIFYSHRAGGPYYRWRYEALRGEWLCSRMHAGDLVVTELVSAPWKEVPAGLRTTLDLHYVE*
Ga0079217_1000002719	F033848	N/A	MKTLYAMRRANGDWFAVADNGNLRMPIFKSSADAMTAYWRDSGMECFRPVTFDAHSLEELRRTDGQTASFFMITDPSRHLKHGLRLSFTELAPFMVT*
Ga0079217_1000002722	F001505	GGA	MQETIVETHAQVQKDFDAVRWEEQNLWLTEGQANDRIPMNGSVKDIDGAPSVQRSFARRSHQVMFKKWSQARHD*
Ga0079217_100000275	F021790	GAG	MSSLILAPQRLFGLLELDLQGTVVFSKLEGDEKLPGAVDIVGRNFFSEVATFLNVAEFRQHFETFDGKPEPSSSFTFNCDYEDGAVPVKVLLARLREDTKYPGSVLVYIKKADSKAPTRTERSVRCVE*