Scaffold Ga0075425_100000002

Overview

Basic Information

• Taxon OID: 3300006854
• Scaffold ID: Ga0075425_100000002
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 362431
• Total Scaffold Genes: 328
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 188 (57.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F001605	Metagenome / Metatranscriptome	664	Y
F014455	Metagenome / Metatranscriptome	263	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075425_100000002127	F001605	N/A	MTTEPQALAQLPFKHLEETIRQLRSTRNDIIRYGVWNVRNLTDEEFNRTDDRRLFGYFRQDLLETRFLSKGRRIDLIQLWKWFDDQMSGIEPLLVDGQEVFLNVQDKDLEKVRKRIAEIQAFLPTLRSDDLEAFKRVKYKLRRTVMRLTYDLHHLFKRLEKYRKNFGAAAAVRPERVPLEAVAEIPEPVGMEDED*
Ga0075425_100000002151	F014455	AGGAGG	MMHFLKKLLMFRIGQKASRGFAKTIGLDALAGIVGLVGGVKYMRRHS*
Ga0075425_100000002301	F001519	N/A	MTLVNSLCAEISIYEGMGEPTGLVVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPIELWPKTKGPVTVHKHDWTVIGSIPRTSRSNKKGMKASA*