Scaffold Ga0075433_10019098

Overview

Basic Information

• Taxon OID: 3300006852
• Scaffold ID: Ga0075433_10019098
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5702
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001083	Metagenome / Metatranscriptome	783	Y
F073691	Metagenome	120	Y
F090738	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075433_100190983	F001083	GAGG	MLSYKKVFAVERVPMNTNERQIALSVLEGLRADLLYARLNNGTGIIDVADLRQYIYEQMGRIRTNALVMDGLYGNDNGDRQDINRSHDNGKVQS*
Ga0075433_100190984	F090738	N/A	MTNCLECENLNRVYGSKLAKYHAARCAVLYRINTEFAARQQVDMERAKNDMEEHLLTCPFATKAGCLMPQESSVLERFQ*
Ga0075433_100190986	F073691	GGA	MLTTTMKYVAVVVLIVSLFWYLPANLRSYLDFVITAAAVFALVQAVNLRKYAWGAAFVAVACVFNPIHPIGFSSAVQVAMQVISAALFAVSLQALRTSPRMTIASITGANPRTESL*