Scaffold Ga0075428_100197366

Overview

Basic Information

• Taxon OID: 3300006844
• Scaffold ID: Ga0075428_100197366
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2176
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010721	Metagenome / Metatranscriptome	300	Y
F018748	Metagenome	233	Y
F081904	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075428_1001973662	F018748	AGGAG	MTRHDDWELLDKQLWTATSPPRQSTTTIGLMIVAVFLVGIGIGDILSKSKQANTHYAAMVSRLAEAPP*
Ga0075428_1001973663	F010721	GGCGG	MIRVFVETPEGRDSAGFTVPESAAAADVLTALRSRGWSPIALRLDLEQNAWIALVLDWRRAA*
Ga0075428_1001973667	F081904	GGAG	MSRAEQYMHLATHVRSRASRESSPILKAEWENLAETYVRLAVLHDEWETDLTCDPIQDMLDRTRH*