Metagenome / Metatranscriptome Family F081904

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081904
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	66 residues
Representative Sequence	MSRAEQYRHLATDVRSRASRESNPMLKAEWENLAETYVQLAEQSDDEWDTDLTYDPIQDMLDRTRH
Number of Associated Samples	85
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	63.16 %
% of genes near scaffold ends (potentially truncated)	36.84 %
% of genes from short scaffolds (< 2000 bps)	81.58 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.263 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.807 % of family members)
Environment Ontology (ENVO)	Unclassified (29.825 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.38% β-sheet: 0.00% Coil/Unstructured: 43.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF03631	Virul_fac_BrkB	19.30
PF01227	GTP_cyclohydroI	8.77
PF02652	Lactate_perm	7.89
PF06823	DUF1236	3.51
PF12071	DUF3551	1.75
PF12277	DUF3618	1.75
PF01019	G_glu_transpept	1.75
PF07332	Phage_holin_3_6	0.88
PF16657	Malt_amylase_C	0.88
PF05974	DUF892	0.88
PF01048	PNP_UDP_1	0.88
PF04828	GFA	0.88
PF01145	Band_7	0.88
PF04392	ABC_sub_bind	0.88
PF00285	Citrate_synt	0.88
PF00188	CAP	0.88
PF13406	SLT_2	0.88
PF00313	CSD	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	19.30
COG1620	L-lactate permease	Energy production and conversion [C]	7.89
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.75
COG0372	Citrate synthase	Energy production and conversion [C]	0.88
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.88
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.88
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.88
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.88
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.88
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.88
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.26 %
All Organisms	root	All Organisms	44.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.26 %
cellular organisms	root	All Organisms → cellular organisms	44.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.26 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.98 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.35 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.26 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.32 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	1.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.26 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.16 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1.75 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.26 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.26 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1.75 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.88 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.26 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.39 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.88 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.88 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.88 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.26 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.39 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.88 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.88 %
Pseudomonas fluorescens group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group	0.88 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.26 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.39 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	0.88 %
Pseudomonas fluorescens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E01EH903	Not Available	501	Open in IMG/M
2228664021\|ICCgaii200_c0932151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3756	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10012674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2323	Open in IMG/M
3300001431\|F14TB_101192873	Not Available	592	Open in IMG/M
3300002899\|JGIcombinedJ43975_10056781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	668	Open in IMG/M
3300003911\|JGI25405J52794_10016331	Not Available	1466	Open in IMG/M
3300004479\|Ga0062595_100504211	Not Available	910	Open in IMG/M
3300004479\|Ga0062595_101116396	Not Available	691	Open in IMG/M
3300005295\|Ga0065707_10339150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	936	Open in IMG/M
3300005332\|Ga0066388_100008272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7766	Open in IMG/M
3300005332\|Ga0066388_100028925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5140	Open in IMG/M
3300005332\|Ga0066388_100209807	All Organisms → cellular organisms → Bacteria → Proteobacteria	2573	Open in IMG/M
3300005332\|Ga0066388_100393716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2031	Open in IMG/M
3300005332\|Ga0066388_100630139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1690	Open in IMG/M
3300005332\|Ga0066388_100678421	Not Available	1641	Open in IMG/M
3300005332\|Ga0066388_103855201	All Organisms → cellular organisms → Bacteria → Proteobacteria	765	Open in IMG/M
3300005332\|Ga0066388_105947321	Not Available	616	Open in IMG/M
3300005713\|Ga0066905_100121819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1821	Open in IMG/M
3300005713\|Ga0066905_100804328	Not Available	816	Open in IMG/M
3300005713\|Ga0066905_100979645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300005764\|Ga0066903_100151392	All Organisms → cellular organisms → Bacteria → Proteobacteria	3334	Open in IMG/M
3300005937\|Ga0081455_10177810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1614	Open in IMG/M
3300006049\|Ga0075417_10021333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2583	Open in IMG/M
3300006049\|Ga0075417_10182552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	987	Open in IMG/M
3300006806\|Ga0079220_12076269	Not Available	508	Open in IMG/M
3300006844\|Ga0075428_100197366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2176	Open in IMG/M
3300006844\|Ga0075428_100551061	Not Available	1233	Open in IMG/M
3300006844\|Ga0075428_101556884	Not Available	692	Open in IMG/M
3300006845\|Ga0075421_100111886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3431	Open in IMG/M
3300006852\|Ga0075433_10202140	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1766	Open in IMG/M
3300006852\|Ga0075433_11219722	Not Available	653	Open in IMG/M
3300006854\|Ga0075425_100745676	Not Available	1123	Open in IMG/M
3300006871\|Ga0075434_100174782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2167	Open in IMG/M
3300006969\|Ga0075419_11324185	Not Available	535	Open in IMG/M
3300007076\|Ga0075435_100647709	All Organisms → cellular organisms → Bacteria → Proteobacteria	917	Open in IMG/M
3300009100\|Ga0075418_10453836	Not Available	1373	Open in IMG/M
3300009100\|Ga0075418_11540278	Not Available	722	Open in IMG/M
3300009168\|Ga0105104_10191484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1110	Open in IMG/M
3300009792\|Ga0126374_10764289	Not Available	734	Open in IMG/M
3300010043\|Ga0126380_10000438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13614	Open in IMG/M
3300010043\|Ga0126380_10097104	Not Available	1756	Open in IMG/M
3300010046\|Ga0126384_10338796	Not Available	1249	Open in IMG/M
3300010046\|Ga0126384_12120004	Not Available	540	Open in IMG/M
3300010047\|Ga0126382_10710730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	844	Open in IMG/M
3300010047\|Ga0126382_11964414	Not Available	555	Open in IMG/M
3300010048\|Ga0126373_10247173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	1754	Open in IMG/M
3300010154\|Ga0127503_11171059	Not Available	530	Open in IMG/M
3300010358\|Ga0126370_12311056	Not Available	532	Open in IMG/M
3300010359\|Ga0126376_10079753	Not Available	2428	Open in IMG/M
3300010361\|Ga0126378_10093581	Not Available	2947	Open in IMG/M
3300010362\|Ga0126377_10107683	All Organisms → cellular organisms → Bacteria → Proteobacteria	2554	Open in IMG/M
3300010362\|Ga0126377_10252791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1717	Open in IMG/M
3300010937\|Ga0137776_1872185	Not Available	547	Open in IMG/M
3300012941\|Ga0162652_100066765	All Organisms → cellular organisms → Bacteria → Proteobacteria	608	Open in IMG/M
3300012948\|Ga0126375_11417544	Not Available	590	Open in IMG/M
3300015371\|Ga0132258_10832517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2328	Open in IMG/M
3300015373\|Ga0132257_101706189	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300015374\|Ga0132255_103036013	Not Available	716	Open in IMG/M
3300015374\|Ga0132255_103702997	Not Available	650	Open in IMG/M
3300016341\|Ga0182035_11563800	Not Available	594	Open in IMG/M
3300016404\|Ga0182037_11217360	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	662	Open in IMG/M
3300017944\|Ga0187786_10014956	Not Available	1964	Open in IMG/M
3300017947\|Ga0187785_10622870	Not Available	557	Open in IMG/M
3300017974\|Ga0187777_10098314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1920	Open in IMG/M
3300018000\|Ga0184604_10252420	Not Available	617	Open in IMG/M
3300018028\|Ga0184608_10442275	Not Available	560	Open in IMG/M
3300018031\|Ga0184634_10446060	Not Available	584	Open in IMG/M
3300018051\|Ga0184620_10277657	Not Available	564	Open in IMG/M
3300018060\|Ga0187765_10861493	Not Available	610	Open in IMG/M
3300018067\|Ga0184611_1078562	Not Available	1129	Open in IMG/M
3300018072\|Ga0184635_10054700	All Organisms → cellular organisms → Bacteria → Proteobacteria	1544	Open in IMG/M
3300018072\|Ga0184635_10160120	Not Available	899	Open in IMG/M
3300018073\|Ga0184624_10475090	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300018076\|Ga0184609_10568856	Not Available	511	Open in IMG/M
3300018081\|Ga0184625_10283757	Not Available	866	Open in IMG/M
3300018482\|Ga0066669_10500791	All Organisms → cellular organisms → Bacteria → Proteobacteria	1051	Open in IMG/M
3300021344\|Ga0193719_10319203	Not Available	650	Open in IMG/M
3300021560\|Ga0126371_10007808	All Organisms → cellular organisms → Bacteria → Proteobacteria	9598	Open in IMG/M
3300021560\|Ga0126371_13356050	Not Available	541	Open in IMG/M
3300021951\|Ga0222624_1348356	Not Available	581	Open in IMG/M
3300022694\|Ga0222623_10098659	Not Available	1136	Open in IMG/M
3300022756\|Ga0222622_10326706	Not Available	1063	Open in IMG/M
3300027873\|Ga0209814_10000451	All Organisms → cellular organisms → Bacteria → Proteobacteria	13388	Open in IMG/M
3300027873\|Ga0209814_10215642	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
3300027909\|Ga0209382_10193528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2334	Open in IMG/M
3300028719\|Ga0307301_10323231	Not Available	507	Open in IMG/M
3300028768\|Ga0307280_10398580	Not Available	513	Open in IMG/M
3300028784\|Ga0307282_10062785	All Organisms → cellular organisms → Bacteria	1677	Open in IMG/M
3300028793\|Ga0307299_10373772	Not Available	534	Open in IMG/M
3300028807\|Ga0307305_10408328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300028814\|Ga0307302_10205780	Not Available	961	Open in IMG/M
3300028824\|Ga0307310_10104722	Not Available	1263	Open in IMG/M
3300028828\|Ga0307312_10044523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2632	Open in IMG/M
3300028876\|Ga0307286_10200153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300028878\|Ga0307278_10157642	Not Available	1016	Open in IMG/M
3300028878\|Ga0307278_10369992	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300030829\|Ga0308203_1021630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	841	Open in IMG/M
3300030829\|Ga0308203_1058720	Not Available	597	Open in IMG/M
3300030829\|Ga0308203_1068636	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300030830\|Ga0308205_1030662	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300030902\|Ga0308202_1110431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	578	Open in IMG/M
3300030902\|Ga0308202_1143757	Not Available	526	Open in IMG/M
3300030903\|Ga0308206_1002604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2034	Open in IMG/M
3300030903\|Ga0308206_1066744	Not Available	748	Open in IMG/M
3300030905\|Ga0308200_1153088	Not Available	534	Open in IMG/M
3300031058\|Ga0308189_10487418	Not Available	529	Open in IMG/M
3300031091\|Ga0308201_10125014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	775	Open in IMG/M
3300031091\|Ga0308201_10346222	Not Available	543	Open in IMG/M
3300031092\|Ga0308204_10190401	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300031226\|Ga0307497_10103304	Not Available	1114	Open in IMG/M
3300031744\|Ga0306918_10554757	Not Available	900	Open in IMG/M
3300031879\|Ga0306919_11023073	Not Available	631	Open in IMG/M
3300032013\|Ga0310906_10565549	Not Available	779	Open in IMG/M
3300032174\|Ga0307470_10122997	Not Available	1536	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.82%
Host-Associated	Host-Associated	20.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.79%
Plants	Host-Associated → Plants	20.18%
Aquatic	Environmental → Aquatic	14.04%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.91%
Sediment	Environmental → Aquatic → Sediment	10.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.26%
Freshwater	Environmental → Aquatic → Freshwater	2.63%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.88%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.91%
Loam	Environmental → Terrestrial → Soil → Loam	11.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.51%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.88%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.53%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.51%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.88%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.53%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.51%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.51%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.51%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.75%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.88%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.88%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.88%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_07254230	2189573000	Grass Soil	MSRAEQYRHLATDVRSRASREPNPMLKAEWENLVETYVQLAEQSEWDTDLTYDPIQDMLDRTRH
ICCgaii200_09321516	2228664021	Soil	MGRADQYRHLASDVRNRASREANPILKAEWENLAETYVRLAEQSDEWSADLTYDPIQDMLDRTRH
AF_2010_repII_A1DRAFT_100126742	3300000597	Forest Soil	LAVDVRARASREPSLILKNGWENLAEIYIRLAKQSEESADALPTDDPIWGILDRSRS*
F14TB_1011928732	3300001431	Soil	MSRAEQYRSLAESVRARASSEPSLILKGEWENLAETYDRLAEQSEDPSSGPTYDPLWDILANWRH*
JGIcombinedJ43975_100567812	3300002899	Soil	MGRADQYRHLASDVRNRASREANPILKAEWENLAETYVRLAEQSDEWSADLTYDPIQDMLDRTRH*
JGI25405J52794_100163311	3300003911	Tabebuia Heterophylla Rhizosphere	MSRAEQYRHLASDVRNRAERESNPILKAEWENLAETYVRLAEQSDEWSADLTYDPIQDMLDRTRH*
Ga0062595_1005042112	3300004479	Soil	MSRAEQYRHLATDVRSRASRESDPMLKAEWENLAETYVQFAEQSDDEWDTGLTYDPIQDMLDRTRH*
Ga0062595_1011163961	3300004479	Soil	MGRVEQYRSLAAGVRARASRETSPILKAEWENLAEIYLRLADQSGDASAPTYDPIEDILKH*
Ga0065707_103391502	3300005295	Switchgrass Rhizosphere	MGRADQYRHLASDVRNRASRESNPILKAEWENLADTYVRLAEQSDEWSADLTYDPIQDMLDRTRH*
Ga0066388_1000082722	3300005332	Tropical Forest Soil	MSRAEQYRHLATDVLSRASREPNPILKAEWENLAETYVRLAEQSEEDWSARLTYDPIQEILDRTRH*
Ga0066388_1000289255	3300005332	Tropical Forest Soil	MGRADQYRILAVDVRARASREPSLILKNGWENLAEIYIRLAKQSEESADALPTDDPIWGILDRSRS*
Ga0066388_1002098073	3300005332	Tropical Forest Soil	MGRADQYRNLATDVRARASRESSPILKAEWENLADTYVRLAEQSEDAPNTNPTYDPIWDILDRSRR*
Ga0066388_1003937162	3300005332	Tropical Forest Soil	MGRAEQYRHLATDVLSRASREPNPILKAEWENLAETYVRLAEQSADGWLDDLTYDPIQDMLDRTRH*
Ga0066388_1006301392	3300005332	Tropical Forest Soil	MGRADQYRSLATDVRVRASRESSPILRAEWENLAETYVRLAEQSEDALNTGPTYDPIWDILDRSRH*
Ga0066388_1006784213	3300005332	Tropical Forest Soil	MSRAEQYRHLATDVLSRASREPNPLLKAEWENLAETYVRLAEQSEDDWNASLDYDPIQDMLERTRH*
Ga0066388_1038552011	3300005332	Tropical Forest Soil	MGRAEQYRHLATDVRNRAARESNPILKAEWENLAETYVRMAEQSDEWNADLTYDPIQDMLDRTRH*
Ga0066388_1059473211	3300005332	Tropical Forest Soil	MSRAEQYRHLAMDVLSRASREPNPFLKAEWENLAETYVRLAEQSEDAWNASLDYDPIQ
Ga0066905_1001218192	3300005713	Tropical Forest Soil	MSRAEQYRHLASDVRSRADRESNPILKAEWENLAETYVRLAEQSDEWSADLTYDPIQDMLDRTRH*
Ga0066905_1008043281	3300005713	Tropical Forest Soil	MGRAEQYRHLATDVLSRASREPNPILKAEWENLAETYVRLAEQSADGWLDDLTYDPIQDM
Ga0066905_1009796452	3300005713	Tropical Forest Soil	MSRAEQYRHLASDVRNRAARESNPILKAEWENLAETYVRLAEQSEDEWDADLTYDPIQDMLERTRH*
Ga0066903_1001513921	3300005764	Tropical Forest Soil	AEQYWNLATDVRARASKESSPILKAEWENLAETYVRLAEQSEDSGGANLTYDPVWDILDRTAH*
Ga0081455_101778102	3300005937	Tabebuia Heterophylla Rhizosphere	MGRAEQYRHLASDVRNRAARESNPILKAEWENLAETYVRLAEQSEDEWDADLTYDPIQDMLERTRH*
Ga0075417_100213332	3300006049	Populus Rhizosphere	MGRVEQYRHLATDVRNRAARESNPILRAEWENLAETYVRLAEQSGEWNADLTYDPIQDMLDRTRH*
Ga0075417_101825521	3300006049	Populus Rhizosphere	MSRAEQYRHLASDVRNRAERESNPILKAEWENLAETYVRLAEQSDDEWSADLTYDPIQDMLERTRH*
Ga0079220_120762692	3300006806	Agricultural Soil	ADQYRNLATDVRARASRESSPILKAEWENLAETYVRLAEQSEDVAGTNPTYDPIWDILDRSAR*
Ga0075428_1001973667	3300006844	Populus Rhizosphere	MSRAEQYMHLATHVRSRASRESSPILKAEWENLAETYVRLAVLHDEWETDLTCDPIQDMLDRTRH*
Ga0075428_1005510612	3300006844	Populus Rhizosphere	MSRAEQYRHLATDVRSRASRESNPMLKAEWENLAETYVRLAEQSDDEWDTDDLTYDPIQDMLDRTRH*
Ga0075428_1015568842	3300006844	Populus Rhizosphere	MGRAEQYRHLASDVRNRADRESNPILKAEWENLAETYVRLAEQSDDEWSADLTYDPIQDMLERTRH*
Ga0075421_1001118867	3300006845	Populus Rhizosphere	MSRAEQYRHLATDVWNRASREPNPMLKGEWENLANTYVRLAEQSDDGWDTPYDPIQDMLDRTRH*
Ga0075433_102021404	3300006852	Populus Rhizosphere	MSRAEQYRHLATDVRNRASREPNPMLKGEWENLANTYVRLAEQSDDGWDTPYDPIQDMLDRTRH*
Ga0075433_112197222	3300006852	Populus Rhizosphere	MSRAEQYMHLATHVRSRASRESNPILKAEWENLAETYIRLAVLHDEWDADLTYDPIQNMLDRTRH*
Ga0075425_1007456762	3300006854	Populus Rhizosphere	MSRAEQYMHLATHVRSRASRESNPILKAEWENLAETYIRLAVLHDEWDTDLTYDPIQDMLDRTRH*
Ga0075434_1001747821	3300006871	Populus Rhizosphere	MGRAEQYRHLASDVRNRADRESNPILKAEWENLAETYVRLAEQSDDEWSADLTYDPIQDM
Ga0075419_113241851	3300006969	Populus Rhizosphere	MSRAEQYRHLATDVRSRASRESNPMLKAEWENLAETYVRLAEQSDDEWDTDDLTYDPIQDMLDRTRH
Ga0075435_1006477092	3300007076	Populus Rhizosphere	MPVPMLALRQSETTMQRSSPMGRAEQYRHLASDVRNRADRESNPILKAEWENLAETYVRLAEQSDDEWSADLTYDPIQDMLERTRH*
Ga0075418_104538362	3300009100	Populus Rhizosphere	LASDVRNRADRESNPILKAEWENLAETYVRLAEQSDDEWSADLTYDPIQDMLERTRH*
Ga0075418_115402782	3300009100	Populus Rhizosphere	MSRAEQYRHLATDVRNRASREPNPMLKGEWENLAQTYVRLAEQSDDGWDTDDLIYDPIQDMLDRTRH*
Ga0105104_101914841	3300009168	Freshwater Sediment	LASDVRNRAEQESNPILKAEWENLAETYVRLAEQSDELSADLTYDPIQDMLDRTRH*
Ga0126374_107642892	3300009792	Tropical Forest Soil	MGRAEQYWNLATDVRARASKESSPILKAEWENLAETYVRLAEQSEDSGGANLTYDPVWDILDRTAH*
Ga0126380_100004385	3300010043	Tropical Forest Soil	LASDVRNRAARESNPILKAEWENLAETYVRLAEQSEDEWDADLTYDPIQDMLERTRH*
Ga0126380_100971042	3300010043	Tropical Forest Soil	MGRAEQYWNLATDVRARASKESSPILKAEWENLAETYVRLAEQSEDSAGTNLTYDPVWDILDRTAH*
Ga0126384_103387961	3300010046	Tropical Forest Soil	QYRSLATDVRVRASRESSPILRAEWENLAETYVRLAEQSEDALNTGPTYDPIWDILDRSRH*
Ga0126384_121200041	3300010046	Tropical Forest Soil	MGRADQYRTLATDVRARASKESSPILKAEWENLAETYVRLAEQSEDALNTNPTYDPIWDILDRSRR*
Ga0126382_107107302	3300010047	Tropical Forest Soil	MGRADQYRNLASDVRVRASRESSPILRAEWENLAETYVRLAEQSEDTQNTGPTYDPIWDILDRSRR*
Ga0126382_119644141	3300010047	Tropical Forest Soil	MDVLSRASREPNPFLKAEWENLAETYVRLAEQSEDAWNASLDYDPIQDMLERTRH*
Ga0126373_102471731	3300010048	Tropical Forest Soil	MGRAEQYWNLATDVRARASKESSPILKAEWENLAETYVRLAVQSEDSGGANLTYDPVWDILDRTAH*
Ga0127503_111710591	3300010154	Soil	FNQRSSVMSRAEQYRHLATDVRSRASRESDPMLKAEWENLAETYVQFAEQSDDEWDTGLTYDPIQDMLDRTRH*
Ga0126370_123110561	3300010358	Tropical Forest Soil	MGRADQYRILATDVRARASRESSPILKAEWENLAETYVRLAEQSEDAATTNLTYDPIWDILDRSRR*
Ga0126376_100797532	3300010359	Tropical Forest Soil	MGRADQYRILAADVRARASREPSLILKNGRENLAEIYIRLAKQSEESADALPTDDPIWGILDRSRS*
Ga0126378_100935814	3300010361	Tropical Forest Soil	IQRSSPMGRAEQYWNLATDVRARASKESSSILKAEWENLAETYVRLAEQSEDSGGANLTYDPVWDILDRTAH*
Ga0126377_101076832	3300010362	Tropical Forest Soil	LATDVRNRAARESNPILKAEWENLAETYVRMAEQSDEWNADLTYDPIQDMLDRTRH*
Ga0126377_102527911	3300010362	Tropical Forest Soil	MGRAEQYRHLATDVLSRASREPNPILKAEWENLAETYVRLEEQSADGWLDDLTYDPIQDMLDRTRH*
Ga0137776_18721851	3300010937	Sediment	MGRTEQYRSLATDVRARASKESSPILKAEWENLAETYVRLAEQSEDATGMNLTYDPIWDILDRSAR*
Ga0162652_1000667652	3300012941	Soil	LASDVRNRASRESNPILKAEWENLAETYVRLAEQSDEWSADLTYDPIQDMLDRTRH*
Ga0126375_114175442	3300012948	Tropical Forest Soil	MGRAEQYRHLASDVRDRAARESNPILKAEWENLAETYVRLAEQSEDEWGTDVTYDPIQDMLERTRH*
Ga0132258_108325172	3300015371	Arabidopsis Rhizosphere	MGRADQYRNLATDVRARASRESSPILKAEWENLAETYVRLAEQSEDAPNTNPTYDPIWDILDRSRH*
Ga0132257_1017061893	3300015373	Arabidopsis Rhizosphere	MGRVEQYRSLAASVRAQASREPSPILKAEWENLAKTYLRLAEQSTEHDGDLTYD
Ga0132255_1030360132	3300015374	Arabidopsis Rhizosphere	MGRVEQYRSLAASVRAQASREPSPILKAEWENLAKTYLRLAEQSTEHDGELTYDPIWDIFARSRH*
Ga0132255_1037029972	3300015374	Arabidopsis Rhizosphere	MGRTEQYRSLATDVRARASKESSPILKAEWENLAETYVRLAEQSEDGDGTDPTYDPIWDILDRSAH*
Ga0182035_115638002	3300016341	Soil	PMGRAEQYWKLATEVRIRASKESNPILKAEWENLAGTYVRLAEQTEDATGALPTYDPIWDILDRSAR
Ga0182037_112173601	3300016404	Soil	VPMLAVYSFQRSSPMGRAEQYWKLATEVRIRASKESNPILKAEWENLAGTYVRLAEQTEDATGALPTYDPIWDILDRSAR
Ga0187786_100149563	3300017944	Tropical Peatland	MTRAEQYRNLASGVRMRAAKESSPVLKAEWENLAQTYVRLAEQSEDVSTADPTYDPIWDILDRSR
Ga0187785_106228701	3300017947	Tropical Peatland	MDRAEQYRSLATDVRARASKESSPVLKAEWENLAETYVRLAEQSEDTTRMNLTYDPIWDILDRSAR
Ga0187777_100983142	3300017974	Tropical Peatland	MGRAEQYRNLATNVRARASKESSPILKAKWENLAETYVRLAEQSEDATGMNLTYDPIWDILDRSAR
Ga0184604_102524202	3300018000	Groundwater Sediment	MSRAEQYRHLATDVRSRASREPNPMLKAEWENLVETYVQLAEQSEWDTDLTYDPIQ
Ga0184608_104422752	3300018028	Groundwater Sediment	MSRAEQYRHSATDVRSRASRESNPMLKAEWENLAETYVQLAEQSEWDTDLTYDPIQDMLDRTRH
Ga0184634_104460602	3300018031	Groundwater Sediment	MNQRGSKMSRAEQYRHLATDVLSRASRESNPILRAEWENLAETYVRLAEQSDDERAITYDPIQDLLNRTRQ
Ga0184620_102776571	3300018051	Groundwater Sediment	QYRHLATDVRSRASREPNPMLKAEWENLAETYVQLAEQSDDEWDTDLTYDPIQDMLDRTR
Ga0187765_108614931	3300018060	Tropical Peatland	MGRAEQYRNLATNVRARASKESSPILKAEWENLAETYVRLAEQSEDATGMNLTYDPIWDILDRSAR
Ga0184611_10785622	3300018067	Groundwater Sediment	MSRAEQYRHLATDVRSRASRESNPMLKAEWDNLAETYVRLAEQSDDEWDTDLTYDPIQDMLDRTRH
Ga0184635_100547002	3300018072	Groundwater Sediment	MNQRGSKMSRAEQYRHLATDVLSRASRESNPILRAEWENLAETYVRLAEQSDDERAITYDPIQDLLNRTRH
Ga0184635_101601201	3300018072	Groundwater Sediment	MSRAEQYRHLATDVRSRASREPNPMLKAEWENLVETYVQLAEQSDDEWDTDLTYDPIQDMLDRTRH
Ga0184624_104750902	3300018073	Groundwater Sediment	PVPEERNTGFHGWPYDYRSMNQRGSKMSRAEQYRHLATDVLSRASRESNPILRAEWENLAETYVRLAEQSDDERAITYDPIQDLLNRTRH
Ga0184609_105688561	3300018076	Groundwater Sediment	MGRAEQYRHLASDVRNRAAQESNPILKAEWQNLGETYVRLAEQSDEWDADLTYDPIQDMLDRTRH
Ga0184625_102837571	3300018081	Groundwater Sediment	ECRFLCWPYDGGFNQRGSVMSRAEQYRHLATDVRSRASRESNPMLKAERDNLAETYVRLAEQSDDEWDTGLTYDPIQDMLDRTRH
Ga0066669_105007913	3300018482	Grasslands Soil	MNRADQYRNLAKDVRTRASSESNPILKAEWENLAETYIRLAEQSDDRNKDPVYDPIWDILDRTRH
Ga0193719_103192031	3300021344	Soil	MSRAEQYTHLATDVRSRASRESNPMLKAEWENLAETYVRLAEQSDDEWDTDDLTYDPIQDMLDRTRH
Ga0126371_100078087	3300021560	Tropical Forest Soil	MGRAEQYWNLATDVRARASKESSPILKAEWENLAETYVRLAEQSEDSAGANLTYDPVWDILDRTAH
Ga0126371_133560501	3300021560	Tropical Forest Soil	MGRADQYRILAVDVRARASREPSLILKNGWENLAEIYIRLAKQSEESADALPTDDPIWGILDRSRS
Ga0222624_13483562	3300021951	Groundwater Sediment	FNQRSSVMSRAEQYRHLATDVRSRASRESNPMLKAEWENLAETYVQLAEQSDDEWDTDLTYDPIQDMLDRTRH
Ga0222623_100986591	3300022694	Groundwater Sediment	MGRAEQYRHLPSDVRNRAAQESNPILKAEWQNLGETYVRLAEQSDEWDADLTYDP
Ga0222622_103267064	3300022756	Groundwater Sediment	MSRAEQYRHLATDVRSRASRESNPMLKAEWENLAETYVQLAEQSDDEWDTDLTYDPIQDMLDRTRH
Ga0209814_100004513	3300027873	Populus Rhizosphere	MGRVEQYRHLATDVRNRAARESNPILRAEWENLAETYVRLAEQSGEWNADLTYDPIQDMLDRTRH
Ga0209814_102156422	3300027873	Populus Rhizosphere	MPVPMLALRQSETTMQRSSPMGRAEQYRHLASDVRNRADRESNPILKAEWENLAETYVRLAEQSDDEWSADLTYDPIQDMLERTRH
Ga0209382_101935282	3300027909	Populus Rhizosphere	MSRAEQYMHLATHVRSRASRESSPILKAEWENLAETYVRLAVLHDEWETDLTCDPIQDMLDRTRH
Ga0307301_103232311	3300028719	Soil	MQVPLLAYDGGFNQRSSVMSRAEQYRHLATDVRSRASRESNPMLKAEWENLVETYVQLAEQSEWDTDLTYDPIQDMLDRTRH
Ga0307280_103985802	3300028768	Soil	DGGFNQRSSVMSRAEQYRHLATDVRSRASREPNPMLKAEWENLVETYVQLAEQSEWDTDLTYDPIQDMLDRTRH
Ga0307282_100627854	3300028784	Soil	KFNQRSSVMSRAEQYRHLATDVRSRASREPNPMLKAEWENLVETYVQLAEQSEWDTDLTYDPIQDMLDRTRH
Ga0307299_103737721	3300028793	Soil	CRFLCWPYDGEFNQRSSVMSRAEQYRHLATDVRSRASRESNPMLKAEWENLAETYVQLAEQSDDEWDTDLTYDPIQDMLDRTRH
Ga0307305_104083282	3300028807	Soil	RGSVMSRAEQYRHLATDVRSRASRESNPMLKAEWENLAETYVQLAEQSDDEWDTDLTYDPIQDMLDRTRH
Ga0307302_102057802	3300028814	Soil	GTECRFLCWPYDGGFNQRSSVMSRAEQYRHLATDVRSRASREPNPMLKAEWENLVETYVQLAEQSEWDTDLTYDPIQDMLDRTRH
Ga0307310_101047221	3300028824	Soil	AEQYRHLATDVRSRASREPNPMLKAEWENLVETYVQLAEQSEWDPDLTYDPIQDMLDRTR
Ga0307312_100445231	3300028828	Soil	MSRAEQYRHLATDVRSRASREPNPMLKAEWENLAETYVQLAEQSDDEWDTDLTYDPIQDMLDRTRH
Ga0307286_102001532	3300028876	Soil	MNQRGSKMSRAEQYRHLATDVLSRASRESNLILRAEWENLAETYVRLAEQSDDERAITYDPIQDLLNRTRH
Ga0307278_101576423	3300028878	Soil	MTKFNQRSSVMSRAEQYRHLATDVRSRASRESNPMLKAEWENLVETYVQLAEQSEWDTDLTYDPIQDMLDRTRH
Ga0307278_103699922	3300028878	Soil	RAEQYRHLATDVRGRASRESNPILRAEWENLAETYVRLAEQSDDEGEPELTYDPIHDMLNRTRH
Ga0308203_10216302	3300030829	Soil	SVMSRAEQYRHLATDVRSRASRESNPMLKAEWENLAETYVQLAEQSDDEWDTDLTYDPIQDMLDRTRH
Ga0308203_10587202	3300030829	Soil	FNQRSSVMSRAEQYRHLATDVRSRASREPNPMLKAEWENLVETYVQLAEQSEWDTDLTYDPIQDMLDRTRH
Ga0308203_10686362	3300030829	Soil	SVMSRAEQYRHLATDVRSRASRESNPMLKAEWENLAETYVQLAGQSEWDTELTYDPIQDMLDRTRH
Ga0308205_10306621	3300030830	Soil	QPAEFAMNRAEQYRHLATDVRGRASRESNPILKAEWENLAETYVRLAEQSYDECETELTYDPIQDMLNRTRH
Ga0308202_11104312	3300030902	Soil	YRHLATDVRSRASRESNPMLKAEWENLVETYVRLAEQSDDEWDTDLTYDPILDMLDRTRH
Ga0308202_11437571	3300030902	Soil	RHLATDVRSRASRESNPMLKAEWENLAETYVRLAEQSDDEWDTDDLTYDPIQDMLDRTRH
Ga0308206_10026041	3300030903	Soil	MNRAEQYRHLATDVRGRASRESNPILRAEWENLAETYVRLAEQSDDEGEPELTYDPIHDMLNRTRH
Ga0308206_10667441	3300030903	Soil	SVMSRAEQYRHLATDVRSRASRESNPMLKAEWENLVETYVQLAEQSEWDTDLTYDPIQDMLDRTRH
Ga0308200_11530882	3300030905	Soil	FNQRSSVMSRAEQYVRSRASRESDPMLKAEWENLAGTYVQFAEQSDDEWDTGLTYDPIQDMLDRTRH
Ga0308189_104874181	3300031058	Soil	HLATDVRNRASREPNPMLKGEWENLAETYVRLAEQSDDEWDTDDLTYDPIQDMLDRTRH
Ga0308201_101250142	3300031091	Soil	FNQRGSVMSRAEQYRHLATDVRSRASRESNPMLKAEWENLAETYVQLAEQSDDEWDTDLTYDPIQDMLDRTRH
Ga0308201_103462222	3300031091	Soil	FNQRSSVMSRAEQYTHLATDVRSRASRESNPMLKAEWENLAETYVRLAEQSDDEWDTDITYDPIQEMLNRTRH
Ga0308204_101904011	3300031092	Soil	RIFKQRSSPMNRAEQYRHLATDVRGRASRESNPILRAEWENLAETYVRLAEQSDDEGEPELTYDPIHDMLNRTRH
Ga0307497_101033042	3300031226	Soil	MSRAEQYKHLATDVRNRASREPNSMLKGEWENLAETYVRLAEQSEDEWDTDLTYDPIQDMLDRTRH
Ga0306918_105547571	3300031744	Soil	MGRAEQYWKLATEVRIRASKESNPILKAEWENLAGTYVRLAEQTEDATGALPTYDPIWDILDRS
Ga0306919_110230732	3300031879	Soil	MGRAEQYWKLATEVRIRASKESNPILKAEWENLAGTYVRLAEQTEDATGALPTYDPIWDILDRSAR
Ga0310906_105655492	3300032013	Soil	MSRAEQYRHLATDVRSRASRESDPMLKAEWENLAETYVQFAEQSDDEWDTGLTYDPIQDMLDRTRH
Ga0307470_101229974	3300032174	Hardwood Forest Soil	MSRAEQYRHLATDVLGRASRESNPILRAEWENLAETYVRLADQSAEDGLTYDPIQDLLDRTRH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081904

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences