Scaffold Ga0075428_100000085

Overview

Basic Information

• Taxon OID: 3300006844
• Scaffold ID: Ga0075428_100000085
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78003
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (54.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030494	Metagenome	185	Y
F035366	Metagenome	172	Y
F060113	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075428_1000000854	F060113	N/A	MIWFFERPGERLQCEIRQAASGAGYELVWTSNDGRVHVELSDDAAELIRRRRALEHWLRLDGWVRPGRVTPIHPPRTERTRKTDVPLH*
Ga0075428_1000000855	F030494	GGCGG	MERVGPGGRDAARWRADLVGTPVFWLTIVVTLCALVPIAIFPRMRGWVGCAVLLMWTCFFTANAIRSRRLHSIISAPVYLLAAALLAGTASGFIAIDIWMVWVLGAGIIAANLSERFVGKYL*
Ga0075428_1000000856	F035366	N/A	MTITNKNDANKAAVLERLSAVRSALQNEVESPASKRALDQCDRLEVAINQFHAEGLRFAAFTLLRMVFGPGTGFTHPVHIATQNLKDALDSAGYPH*