NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070754_10041597

Scaffold Ga0070754_10041597


Overview

Basic Information
Taxon OID3300006810 Open in IMG/M
Scaffold IDGa0070754_10041597 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2486
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006845Metagenome / Metatranscriptome363Y
F013088Metagenome / Metatranscriptome274Y
F018155Metagenome / Metatranscriptome236Y
F058166Metagenome / Metatranscriptome135N
F067646Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0070754_100415971F058166AGGAGMDILGGMSNTSDSQQVYLAFKTADQQFFVNGQTAIDFKYLQLDPATFKSGWGRYAGEYQYQWDAKFGEASPKPADDWKRAFSCCVMPYGHEHALIWSRFTFAESSAFNKILSSFWNQMDANSNSLPVVEYKGSKEIQVGIGRSSELSFEFSKFAPRFDNFVIPAFYDKDDDAVEDTFK
Ga0070754_100415972F006845AGGMDLNSYLLEEDFEQFCRKSYERISLACEVFGIVNDEDYYSFKERCYTQLESDYLNSIDKTIH*
Ga0070754_100415974F067646AGGAMIEWILYFIAGIFGLVAIAGIISVIAAIYILNELD*
Ga0070754_100415975F018155GAGMGQNKAAVDKRREELEAERLDKSINIYYFQKGAGEHYREIQYESGRVVRTDFND*
Ga0070754_100415976F013088AGGAGMNEKTKKALWISDDLHKEIKIFAIKNNMNIESATQMILKLGMCSYKENKNGSK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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