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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006810 Open in IMG/M |
| Scaffold ID | Ga0070754_10028164 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3173 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009001 | Metagenome | 324 | Y |
| F052535 | Metagenome | 142 | N |
| F054010 | Metagenome | 140 | Y |
| F085539 | Metagenome | 111 | N |
| F088553 | Metagenome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070754_100281641 | F009001 | N/A | MSVTIYLTDHNGRKISFFYRIDNERYLTCPQLIWSCREYPEYQGTAESKEDFIEQCKGVIKRINRSLTKVCDVCDKSLQG |
| Ga0070754_100281642 | F088553 | N/A | MKEFEVELSATTYRTFYVTAESAEQAEELAWEALDEDEEISGAWKDSAKLESVEPTCQ* |
| Ga0070754_100281643 | F052535 | AGTAG | MKRPYEVLALDASNVPVRIATIIENSKPKAKATGQKLAKSLRQRFHTVQLIKE* |
| Ga0070754_100281646 | F085539 | N/A | MNKTTNQDLDSAIARINQLIPQKTFGWYKTPQVYFMATDKGSRRHISARTKRELYDQLWAFIEGIEILRCSYKTI* |
| Ga0070754_100281648 | F054010 | N/A | MKKKTPTPTSTSLSDKQLPVIRIVSTEDEMFTKLNLEMEDSTHDMLVKWGKEEATDEDYISVALRCGLEEYLESIKEKS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |