Scaffold Ga0070754_10005149

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10005149
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8841
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041489	Metagenome	160	Y
F052938	Metagenome	142	Y
F066141	Metagenome	127	Y
F066844	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1000514914	F066141	GGAG	MTHKKELLMMLDRVNKALNVELDLNNAPCFGGWQLTNAEGNNIIKHRVSPKEMSCFLDGMSKSLEIKK*
Ga0070754_1000514919	F052938	GGAG	MIHWKTKEEMGNGFKYDEQEHKEVSYNSLLTIDKHEENTMRTKYLIRDVWSGDVKKLLDLKKHLDDVLTELEEVYTHD*
Ga0070754_1000514924	F066844	AGGAG	MEDEYVYSLKCNNCGDMTCAEVAFFYEDETYCDDCCPEGYGE*
Ga0070754_1000514925	F041489	GGAG	MSILVADIKFYVVDDDGNEKLNKEGTHIQLYELKQGRRFKALEYLTEDMDMDLLEEINE*