Scaffold Ga0079220_10097246

Overview

Basic Information

• Taxon OID: 3300006806
• Scaffold ID: Ga0079220_10097246
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1518
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017357	Metagenome / Metatranscriptome	241	Y
F021653	Metagenome / Metatranscriptome	218	Y
F070476	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079220_100972461	F070476	N/A	MQENLPVFLREAAASLRNLALRAPDIANELRRFADDLEQEVDTAERNTRMSRDDAAD*
Ga0079220_100972464	F017357	AGG	MPQVLYKAADGSWRSSKVSADISPVYRLKAGERWALLDDDRVMVIHPDRPPKVVYPDGRVEEIAAKADA*
Ga0079220_100972465	F021653	GGAG	MTKTSQPGAEPANVSEDRQTPGQWRVEWFDDDGRCELEIFTGHDARRQALRYAMRKYGHFREVQVEAQNEVPRLP*