Metagenome / Metatranscriptome Family F070476

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070476
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	57 residues
Representative Sequence	MQKNLPTFLRDAAASLRDLALRAPDIANELRRFADDLEQEAESVARDLRQGRDDAAD
Number of Associated Samples	86
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.46 %
% of genes near scaffold ends (potentially truncated)	24.39 %
% of genes from short scaffolds (< 2000 bps)	94.31 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (67.480 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (27.642 % of family members)
Environment Ontology (ENVO)	Unclassified (36.585 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.285 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
f.13.1.0: automated matches	d7crja_	7crj	0.86123
f.13.1.0: automated matches	d3ddla_	3ddl	0.86063
a.25.1.1: Ferritin	d1lkoa1	1lko	0.85584
a.25.1.2: Ribonucleotide reductase-like	d3n20b_	3n20	0.85315
a.25.1.1: Ferritin	d2fzfa1	2fzf	0.85068

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF06724	DUF1206	3.25
PF06627	DUF1153	2.44
PF04542	Sigma70_r2	1.63
PF13191	AAA_16	0.81
PF13347	MFS_2	0.81
PF07589	PEP-CTERM	0.81
PF08281	Sigma70_r4_2	0.81
PF00589	Phage_integrase	0.81
PF13683	rve_3	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.63
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.63
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.63
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.63

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.48 %
All Organisms	root	All Organisms	32.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.48 %
cellular organisms	root	All Organisms → cellular organisms	32.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.48 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.46 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.83 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.48 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	23.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.81 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.58 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.58 %
Limimaricola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Limimaricola	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.58 %
Limimaricola hongkongensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Limimaricola → Limimaricola hongkongensis	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.58 %
Limimaricola hongkongensis DSM 17492	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Limimaricola → Limimaricola hongkongensis → Limimaricola hongkongensis DSM 17492	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10364590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300002568\|C688J35102_119512494	Not Available	710	Open in IMG/M
3300004114\|Ga0062593_100894838	Not Available	896	Open in IMG/M
3300004114\|Ga0062593_103181078	Not Available	526	Open in IMG/M
3300004479\|Ga0062595_101495975	Not Available	622	Open in IMG/M
3300004479\|Ga0062595_101682972	Not Available	596	Open in IMG/M
3300005167\|Ga0066672_10811231	Not Available	588	Open in IMG/M
3300005175\|Ga0066673_10189417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1168	Open in IMG/M
3300005175\|Ga0066673_10255392	Not Available	1016	Open in IMG/M
3300005175\|Ga0066673_10329962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	890	Open in IMG/M
3300005175\|Ga0066673_10560186	Not Available	669	Open in IMG/M
3300005176\|Ga0066679_10187968	Not Available	1311	Open in IMG/M
3300005176\|Ga0066679_10784922	Not Available	609	Open in IMG/M
3300005177\|Ga0066690_10362767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	983	Open in IMG/M
3300005179\|Ga0066684_10138056	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	1536	Open in IMG/M
3300005179\|Ga0066684_10166592	Not Available	1408	Open in IMG/M
3300005179\|Ga0066684_10223368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1226	Open in IMG/M
3300005187\|Ga0066675_10024703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3445	Open in IMG/M
3300005187\|Ga0066675_11038042	Not Available	615	Open in IMG/M
3300005344\|Ga0070661_100658954	Not Available	850	Open in IMG/M
3300005434\|Ga0070709_10522646	Not Available	904	Open in IMG/M
3300005435\|Ga0070714_100569700	Not Available	1085	Open in IMG/M
3300005435\|Ga0070714_101024522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	804	Open in IMG/M
3300005435\|Ga0070714_102281756	Not Available	526	Open in IMG/M
3300005436\|Ga0070713_100005545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8648	Open in IMG/M
3300005436\|Ga0070713_100183911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1879	Open in IMG/M
3300005436\|Ga0070713_100988401	Not Available	811	Open in IMG/M
3300005436\|Ga0070713_101269380	Not Available	713	Open in IMG/M
3300005436\|Ga0070713_101278784	Not Available	711	Open in IMG/M
3300005436\|Ga0070713_101748386	Not Available	604	Open in IMG/M
3300005436\|Ga0070713_101857439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300005439\|Ga0070711_100696763	Not Available	855	Open in IMG/M
3300005450\|Ga0066682_10589692	Not Available	699	Open in IMG/M
3300005451\|Ga0066681_10487501	Not Available	759	Open in IMG/M
3300005451\|Ga0066681_10643796	Not Available	650	Open in IMG/M
3300005451\|Ga0066681_10908547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300005454\|Ga0066687_10583516	Not Available	664	Open in IMG/M
3300005554\|Ga0066661_10942140	Not Available	505	Open in IMG/M
3300005555\|Ga0066692_10770156	Not Available	593	Open in IMG/M
3300005560\|Ga0066670_10122045	All Organisms → cellular organisms → Bacteria → Proteobacteria	1490	Open in IMG/M
3300005560\|Ga0066670_10222545	Not Available	1139	Open in IMG/M
3300005560\|Ga0066670_10292625	Not Available	990	Open in IMG/M
3300005560\|Ga0066670_10444697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	799	Open in IMG/M
3300005561\|Ga0066699_10874352	Not Available	629	Open in IMG/M
3300005569\|Ga0066705_10858549	Not Available	539	Open in IMG/M
3300005574\|Ga0066694_10120468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1235	Open in IMG/M
3300005586\|Ga0066691_10616512	Not Available	645	Open in IMG/M
3300005587\|Ga0066654_10021583	All Organisms → cellular organisms → Bacteria	2584	Open in IMG/M
3300005598\|Ga0066706_10476097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	995	Open in IMG/M
3300005614\|Ga0068856_101448446	Not Available	701	Open in IMG/M
3300005614\|Ga0068856_102520090	Not Available	521	Open in IMG/M
3300006031\|Ga0066651_10155810	Not Available	1198	Open in IMG/M
3300006032\|Ga0066696_11056197	Not Available	516	Open in IMG/M
3300006046\|Ga0066652_100243692	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300006173\|Ga0070716_100957655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Limimaricola → Limimaricola hongkongensis → Limimaricola hongkongensis DSM 17492	674	Open in IMG/M
3300006175\|Ga0070712_100227152	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300006175\|Ga0070712_101907559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300006755\|Ga0079222_10329141	Not Available	1017	Open in IMG/M
3300006794\|Ga0066658_10775890	Not Available	537	Open in IMG/M
3300006804\|Ga0079221_10984118	Not Available	631	Open in IMG/M
3300006806\|Ga0079220_10097246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1518	Open in IMG/M
3300006806\|Ga0079220_10219840	Not Available	1113	Open in IMG/M
3300006806\|Ga0079220_11090279	Not Available	645	Open in IMG/M
3300006854\|Ga0075425_100250206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2039	Open in IMG/M
3300006903\|Ga0075426_10030947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3830	Open in IMG/M
3300006914\|Ga0075436_100692228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	755	Open in IMG/M
3300006914\|Ga0075436_100880871	Not Available	669	Open in IMG/M
3300006954\|Ga0079219_10444835	Not Available	881	Open in IMG/M
3300006954\|Ga0079219_11274125	Not Available	644	Open in IMG/M
3300007788\|Ga0099795_10050256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1516	Open in IMG/M
3300009137\|Ga0066709_100825384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1345	Open in IMG/M
3300009545\|Ga0105237_11983387	Not Available	590	Open in IMG/M
3300010159\|Ga0099796_10262580	Not Available	721	Open in IMG/M
3300010159\|Ga0099796_10485067	Not Available	553	Open in IMG/M
3300010321\|Ga0134067_10478177	Not Available	512	Open in IMG/M
3300010337\|Ga0134062_10125586	Not Available	1122	Open in IMG/M
3300010373\|Ga0134128_13239312	Not Available	500	Open in IMG/M
3300010401\|Ga0134121_12792137	Not Available	534	Open in IMG/M
3300012198\|Ga0137364_10743500	Not Available	741	Open in IMG/M
3300012199\|Ga0137383_11085051	Not Available	580	Open in IMG/M
3300012200\|Ga0137382_10154698	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300012200\|Ga0137382_10159846	All Organisms → cellular organisms → Bacteria → Proteobacteria	1532	Open in IMG/M
3300012208\|Ga0137376_11700971	Not Available	522	Open in IMG/M
3300012285\|Ga0137370_10007395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5093	Open in IMG/M
3300012285\|Ga0137370_10193249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1192	Open in IMG/M
3300012285\|Ga0137370_10749913	Not Available	606	Open in IMG/M
3300012361\|Ga0137360_11441663	Not Available	592	Open in IMG/M
3300012469\|Ga0150984_109672488	Not Available	747	Open in IMG/M
3300012582\|Ga0137358_10234860	Not Available	1249	Open in IMG/M
3300012683\|Ga0137398_10320204	Not Available	1045	Open in IMG/M
3300012955\|Ga0164298_11135728	Not Available	587	Open in IMG/M
3300012958\|Ga0164299_11036722	Not Available	608	Open in IMG/M
3300012960\|Ga0164301_10800571	Not Available	721	Open in IMG/M
3300012987\|Ga0164307_11885942	Not Available	506	Open in IMG/M
3300012989\|Ga0164305_11725436	Not Available	563	Open in IMG/M
3300014497\|Ga0182008_10079236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1616	Open in IMG/M
3300014497\|Ga0182008_10199031	Not Available	1019	Open in IMG/M
3300015357\|Ga0134072_10152720	Not Available	761	Open in IMG/M
3300018027\|Ga0184605_10378699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300018061\|Ga0184619_10195333	Not Available	930	Open in IMG/M
3300018433\|Ga0066667_10215172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1426	Open in IMG/M
3300018433\|Ga0066667_11218259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300018468\|Ga0066662_10110138	Not Available	1978	Open in IMG/M
3300018468\|Ga0066662_12583929	Not Available	536	Open in IMG/M
3300018482\|Ga0066669_10405809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1156	Open in IMG/M
3300018482\|Ga0066669_12014727	Not Available	541	Open in IMG/M
3300019877\|Ga0193722_1034364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1308	Open in IMG/M
3300019890\|Ga0193728_1224014	Not Available	773	Open in IMG/M
3300020006\|Ga0193735_1095279	Not Available	835	Open in IMG/M
3300021358\|Ga0213873_10131469	Not Available	741	Open in IMG/M
3300021384\|Ga0213876_10122378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1382	Open in IMG/M
3300025906\|Ga0207699_10407133	Not Available	970	Open in IMG/M
3300025916\|Ga0207663_10890514	Not Available	711	Open in IMG/M
3300025920\|Ga0207649_11244694	Not Available	588	Open in IMG/M
3300025929\|Ga0207664_11909671	Not Available	516	Open in IMG/M
3300026088\|Ga0207641_11986788	Not Available	583	Open in IMG/M
3300026305\|Ga0209688_1058847	Not Available	706	Open in IMG/M
3300026318\|Ga0209471_1108424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1193	Open in IMG/M
3300026547\|Ga0209156_10194403	Not Available	969	Open in IMG/M
3300026547\|Ga0209156_10203397	Not Available	943	Open in IMG/M
3300031058\|Ga0308189_10216363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300031716\|Ga0310813_10584641	Not Available	986	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.80%
Host-Associated	Host-Associated	12.20%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.18%
Plants	Host-Associated → Plants	12.20%
Aquatic	Environmental → Aquatic	1.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.44%
Sediment	Environmental → Aquatic → Sediment	1.63%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Loam	Environmental → Terrestrial → Soil → Loam	19.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.44%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.63%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.81%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	27.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.25%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.44%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_103645902	3300001661	Forest Soil	MQKDLTAFLHEAAESLRDLALRAPDIANELRRFADDLERQAEQRRRDRTSEDDAAD*DRVAWR
C688J35102_1195124942	3300002568	Soil	MQKDLTAFLHEAAESLRDLALRAPDIANELRRFADDLERQAEQRRRDRTSEGDAAD*DRVAWRCRLLASDREMLSNN
Ga0062593_1008948381	3300004114	Soil	MQENLPTFLRDAAASLRDLALRTPDIANELRRFADDLEQEVDTAERNTRMSRDDAAD*
Ga0062593_1031810781	3300004114	Soil	MQENLPTFLRDAAASLRDLALRAPDIANELRRFADDLERQADQAERNIGPQRDDAAD*
Ga0062595_1014959751	3300004479	Soil	MRKNLSEFLREAADSLRDLALRAPDIAGELRRFADDLEEQAQRATRDDRPWGKHDAAD*
Ga0062595_1016829722	3300004479	Soil	MQKNLPTFLRDAAASLRDLALRAPEIANQLRRFADDLEQEAESVARDLRQGRDDAAD*
Ga0066672_108112311	3300005167	Soil	MQENLSVFLHGAAASLRDLALRAPDIANELRRFADELEEAAERAARDTRLGRHDAAD*QA
Ga0066673_101894171	3300005175	Soil	FLRDAAASLRDLALRAPDIANELRRFADDLEQAADQAERNIRPRRNDAA*
Ga0066673_102553922	3300005175	Soil	MRKDVTMFLRDAAASLRDLALRAPDIANELRRFADDLDEEAERGDRPPKDDAAERRQRLD
Ga0066673_103299622	3300005175	Soil	MRKDVTMFLRDAAASLRDLALRAPDIANELRRFADDLDEEAERGNRPRKDDAAD*
Ga0066673_105601862	3300005175	Soil	SGMSCSIGTMQENLSMFLHSAAASLRDLALRAPEIANELRRFADELEEAAERAARDTRLGRHDAAD*
Ga0066679_101879683	3300005176	Soil	MSMFLHGAAASLRDLAVRAPEIANELRRFADELEEAAERAARDTRLGRHNAAD*
Ga0066679_107849222	3300005176	Soil	MQENLPTFLRDAAVSLRDLALRAPDIANELRRFADDLERDAERVERDARPDRDDAA*
Ga0066690_103627671	3300005177	Soil	VPKNLTEFLSEAAASLRDLALRAPDIANELRRFADDLEQEAQRAARDERPRNNNAAD*
Ga0066684_101380563	3300005179	Soil	MPKNLTEFLREAAASLRDLALRAPDIANELRRFADDLEQEAQRAARDEREENNAAD*
Ga0066684_101665922	3300005179	Soil	MSCSIGTMQENLSMFLHGAAASLRDLALRAPDIANELRRFADELEEAAERAARDTRLGRHDAAD*
Ga0066684_102233684	3300005179	Soil	MPKNLSEFLREAAASLRDFALRAPDVANELRRFADDLEQEAQRAARDERPRNNNAAD*
Ga0066675_100247033	3300005187	Soil	MQKDLTAFLHEAAESLRDLALRAPDIANELRRFADDLERQAEQRRRDRTSEDDAAD*
Ga0066675_110380422	3300005187	Soil	MRKDVTMFLREAAASLRDLALRAPDIANELRRFADDLDEEAERGNRPRKDDAAN*
Ga0070661_1006589542	3300005344	Corn Rhizosphere	MQKSLPTFLRDAAASLRDLALRAPDIANELRRFADDLEQEAESVARDLRQGRDDAAD*
Ga0070709_105226461	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MQENLPVFLRDAAASLRDLALRAPDIANELRRFADDLEQKADTAERNTRRSRDDAAD*
Ga0070714_1005697003	3300005435	Agricultural Soil	MQENLPAFLRDAAASLRDLALRTPDIANELRRFADDLEQEADAAERNTRPSRDDAAD*
Ga0070714_1010245221	3300005435	Agricultural Soil	TFLRDAAASLRDLALRAPDIANELRRFADDLEQEADTAERNSRTSRDDAAD*
Ga0070714_1022817562	3300005435	Agricultural Soil	MQKNLPTFLYETAAFLRDLALRAPDIANELRRFADDLEREAESVARGLRQGRDDAAD*
Ga0070713_1000055457	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQENLPTFLRDAAASLRDLALRTPDIANELRRFADDLEQEADAAERNTRPSRDDAA*
Ga0070713_1001839112	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRKDVTLFLRDAADSLRDLALRAPEIANELRRLADDLDEEADREGNRPRKDDAAD*
Ga0070713_1009884011	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQKKLPTFLRDAAASLRDLALRAPDIANELRRFADDLEQEAESVARDLRQGRDDAAD*
Ga0070713_1012693801	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VFLREAAASLRNLALRAPDIANELRRFADDLEQEVDTAERNTRMSRDDAAD*
Ga0070713_1012787841	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQKNLIEFLRDAAASLRHLALRTPDIASELRRFADELEEEARRAARDDRPWNQHNAAD*
Ga0070713_1017483862	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQKNLPTFLYETAAFLRDLALRAPDIANELRRFADDLEREAESVARDLRQGRDDAAD*
Ga0070713_1018574392	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	TFLRDAAASLRDLALRAPDIANELRRFADDLEQEADTAERNTRRSRDDAAD*
Ga0070711_1006967632	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MQKNLPTFLRDAAASLRDLALRAPEIANELRRFADDLEQEAESVARDLRQGRDDAAD*
Ga0066682_105896921	3300005450	Soil	MRKDVTMFLRDAAASLRDLALRAPDIANELRRFADDLDEAAERGNRPRKDDAAD*
Ga0066681_104875011	3300005451	Soil	MQKKLTAFLREAAASLRDLALRTPDIANELRRFAEELDEEAERASREGGPLKDDAAD*
Ga0066681_106437962	3300005451	Soil	LTGTMQENLPTFLRDAAVSLRDLALRAPDIANELRRFADDLERDAERAERDARPDRDDAA
Ga0066681_109085471	3300005451	Soil	LRDAAASLRDLALRAPDIANELRRFADDLDEEAERGDRPPKDDAAE*
Ga0066687_105835162	3300005454	Soil	MQEDLPTFLRDAAVSLRDLALRAPDIANELRRFADDLEQDAERAERDARPDRDDAA*
Ga0066661_109421402	3300005554	Soil	MQENLSMFLHGAAASLRDLALRAPEIANELRRFADELEEAAERAAGTGYPSGRHEAAD*
Ga0066692_107701563	3300005555	Soil	MFYLSNMPKNLTEFLREAAASLRDLALRAPDIANELRRFADDLEQEAQRAARDERPR
Ga0066670_101220451	3300005560	Soil	MFLRDAAASLRELASRAPDIASELRRFADDLDEEAERGNRPRKDDAAD*
Ga0066670_102225452	3300005560	Soil	VEKTLPVLLRETAACLRDLALRAPDIANELRRFADDLEQRAVQAERDTRSAKDDAADWRAALSG*
Ga0066670_102926253	3300005560	Soil	MSCSIRTMQENLSVFLYGAAAFLRDLALRAPDIANELRRFADELEEAAERAARDTRLGRHDAAD*
Ga0066670_104446971	3300005560	Soil	VPKNLTEFLSEAAASLRDLALRAPDIANELRRFADDLEQEVQRAARDERPRNNNAAD*
Ga0066699_108743522	3300005561	Soil	MQENLPTFLRDAAVSLRDLALRAPDIANELRRFADDLERDAERAERDARPDRDDAA*
Ga0066705_108585492	3300005569	Soil	MQENLSMFLHGAAASLRDLALRAPEIANELRRFADELEEAAERAARDTRLGRHDAAD*
Ga0066694_101204681	3300005574	Soil	CLTGTMQENLPTFLRDAAVSLRDLALRAPDIANELRRFADDLEQDAERAERDIRPDRDDAA*
Ga0066691_106165123	3300005586	Soil	VPKNLTEFLSEAAASLRDLALRAPDIANELRRFADDLEQEAQRAARDERPRNNKAAD*
Ga0066654_100215833	3300005587	Soil	LTAFLHEAAESLRDLALRAPDIANELRRFADDLERQAEQRRRDRTSEDDAAD*
Ga0066706_104760974	3300005598	Soil	TFLRDAAASLRDLALHAPDIANELRRFADDLEQQADQAERNIGPQKG*
Ga0068856_1014484461	3300005614	Corn Rhizosphere	MQKNLPTFLRDGAASLRDLALRAPEIANELRRFADDLEQEAESVARDLRQGRDDAAD*
Ga0068856_1025200902	3300005614	Corn Rhizosphere	MHGNLPTFLRDAAASLRDLALRVPDIANELRRFADDLEQEADSAERNARRSRDDAAD*
Ga0066651_101558101	3300006031	Soil	MPKNLTEFLREAAASLRDLALRAPDIANELRRFADDLEQEAQRAARDERPRNNNAAD*
Ga0066696_110561972	3300006032	Soil	GMSCSIGTMQENLSMFLHGAAASLRDLALRAPEIANELRRFADELEEAAERAARDTRLGRHEATDS*
Ga0066652_1002436924	3300006046	Soil	MQKDLTAFLHEAAESLRDLALRAPDIANELRRFADDLERQAEQRRRDRTSEGDAAD*
Ga0070716_1009576552	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MQKNLIEFLRDAAASLRHLALRTPDIASELRRFADELEEEAKRAARDNRPWDQHNAAD*
Ga0070712_1002271522	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQKNLTVFLREAAESLRDLALRAPDIANELRRFADDLDRQAEQPHGKDRTSEDDAAD*
Ga0070712_1019075591	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRKDVTLFIRDAAASLRDLALRAPEIANELRRLADDLDEEADREGDRPRKDDAAD*
Ga0079222_103291412	3300006755	Agricultural Soil	MQKNLPTFLRDAAASLRDLALRAPEIANELRRFADDLEQEAETVARDLRQGRDDAAD*
Ga0066658_107758902	3300006794	Soil	MQENLSMFLHGAAASLRDLALRAPDIANELRRFADELEEAAERAARDTRLGRHDAAG*
Ga0079221_109841181	3300006804	Agricultural Soil	MFLHGAAASLRDLALHAPDIANELRRFADELEGAAERAARDTRLGKDHATH*
Ga0079220_100972461	3300006806	Agricultural Soil	MQENLPVFLREAAASLRNLALRAPDIANELRRFADDLEQEVDTAERNTRMSRDDAAD*
Ga0079220_102198403	3300006806	Agricultural Soil	MQKNLPTFLRDAAASLRDLALRAPDIANELRRFADDLEQEAESVARDLRQGRDDAAD*
Ga0079220_110902791	3300006806	Agricultural Soil	MQKNLIEFLRDAAASLRDLALRTPDIASELRRFADELEEEAKRAERDDRPWDQHHAAD*
Ga0075425_1002502064	3300006854	Populus Rhizosphere	MRKDVTLFIRDAAASLRDLALRAPEIANELRRLADDLDEEADREGNRPRKDDAAD*
Ga0075426_100309474	3300006903	Populus Rhizosphere	TMQKSLIAFLREAADSLRELALRTPDIANELRRFAGDLEREAERAYRNGGTPEDDAAD*
Ga0075436_1006922281	3300006914	Populus Rhizosphere	DVTLFIRDAAASLRDLALRAPEIANELRRLADDLDEEADREGNRPRKDDAAD*
Ga0075436_1008808711	3300006914	Populus Rhizosphere	TMQKSLIAFLREAADSLRELALRTPDIANELRRFADDLERAAERAHGNGGTPEDDAAD*
Ga0079219_104448352	3300006954	Agricultural Soil	MQENLPVFLRDAAASLRGLALRAPDIANELRRFADDLEQKADTAERNTRWSRDDAAD*
Ga0079219_112741251	3300006954	Agricultural Soil	MQENLPTFLRDAAASLRDLALGAPDIANELRRFADDLERQADQAERNIGPQRADAAD*
Ga0099795_100502562	3300007788	Vadose Zone Soil	MFLRDAAASLRDLALRAPDIANELRRFADDLDEAAERGNRPRKDDAAD*
Ga0066709_1008253842	3300009137	Grasslands Soil	MFHRDAAASLRDLALRAPDIANELRRFADDLDEEAERGNRPRKDDAAD*
Ga0105237_119833871	3300009545	Corn Rhizosphere	MQENLPVFLREAAASLRNLALRAPDIANELRRFADDLEQEADAAERNTRPSRDDAA*
Ga0099796_102625803	3300010159	Vadose Zone Soil	MPKNLTEFLSEAAASLRDLALRAPDIANELRRFADDLEEEAQRAARDERPRNNNAAD*
Ga0099796_104850672	3300010159	Vadose Zone Soil	MFLRDAAASLRDLALRAPDIANELRRFADDLDEEAERGNRPRKDDAAN*
Ga0134067_104781772	3300010321	Grasslands Soil	MSCSIGTMQENLSMFLHGAAASLRDLALRALDIANELRRFADKLEEAAQRAARDTRLGRHDAAD*
Ga0134062_101255861	3300010337	Grasslands Soil	MQENLSVFLHGAAASLRDLALRAPEIANELRRFADELEEAAERAARDTRLGRHDAAD*
Ga0134128_132393122	3300010373	Terrestrial Soil	MQKSLIAFLREAADSLRELALRTPDIANELRRFAGDLEREAERAYRNGGTPEDDAAD*
Ga0134121_127921372	3300010401	Terrestrial Soil	MQENLPTFLRDTAASLRDLALRAPDIANELRRFADDLEQQADQTERNTGPQRDDAAD*
Ga0137364_107435002	3300012198	Vadose Zone Soil	MQENLPTFLRDAAASLRDLALHAPDIANELRRFADDLEQQADQAERNIGPQKG*
Ga0137383_110850511	3300012199	Vadose Zone Soil	MQEDLPTFLRDAAASLRDLALRAPDIASELRRFADDVEKEAQRAVRDERPWNKAAN*
Ga0137382_101546982	3300012200	Vadose Zone Soil	MQKNLTAFLHEAAESLRDLALRAPDIANELRRFADDLERQAEQRRHDRTSEDDAAD*
Ga0137382_101598461	3300012200	Vadose Zone Soil	LTEFLSEAAASLRDLALRAPDVANELRRFADDLEQEAQRAARDERPRNNNAAD*
Ga0137376_117009712	3300012208	Vadose Zone Soil	LTEFLSEAAASLRDLALRAPDIANELRRFADDLEQEVQRAARDERPRNNAAAD*
Ga0137370_100073952	3300012285	Vadose Zone Soil	MLCSIGTMQENLSVFLHGAAASLRDLALRAPEIANELRRFADELEEAAERAARDTRLGRHDAAD*
Ga0137370_101932493	3300012285	Vadose Zone Soil	MPKNLSEFLREAAASLRDLALRAPDIANELRRFADDLEQEAQRAARDERPRNNNAAD*
Ga0137370_107499131	3300012285	Vadose Zone Soil	MFLRDAAVSLRDLALRAPDIANELRRFADDLDEAAERGNRPRKDDSVY*
Ga0137360_114416632	3300012361	Vadose Zone Soil	MPKNLTEFLCEAAASLRDLALRAPDIANELRRFADDLEQEAQRAARDERPRNNKAAD*
Ga0150984_1096724882	3300012469	Avena Fatua Rhizosphere	MQEDLPTFLRDAAVSLRDLALRAPDIANELRRFADDLERDAERAERDARPDRDDAA*
Ga0137358_102348603	3300012582	Vadose Zone Soil	MPKNLTEFLREAAASLRDLALRAPDVANELRRFADDLEQEAQRAARDERPRNNKAAD*
Ga0137398_103202042	3300012683	Vadose Zone Soil	MQKDLTAFLHEAAESLRDLALRAPDIANELRRFADDLERQAEQRRHDRTSEDDAAD*
Ga0137395_102705094	3300012917	Vadose Zone Soil	AASLRDLALRAPDISNELRRFADDLDEAAERGNRPRKDDAAD*
Ga0164298_111357281	3300012955	Soil	SLTTFLQEAAESLRDFALRAPDIANELRRFADDLERQAEQPHRNHRTSEDDAAD*
Ga0164299_110367221	3300012958	Soil	MQENLPTFLRGAAASLRDLALRAPDIANELRRFADDLEQQADQAERGPQRDDAAD*
Ga0164301_108005711	3300012960	Soil	MRKDVTLFLRDAADSLRDLALRAPEIADELRRLADDLDEEAERGNRPRKDDAAD*
Ga0164307_118859421	3300012987	Soil	MQENLPTFLRGAAASLRDLALRAPDIANELRRFADDLEQQADQTKRNTGPPLPGTSRSV
Ga0164305_117254362	3300012989	Soil	VSCLTGTMQENLPTFLRGAAASLRALALRAPDIANELRRFADDLEQQADQTERNTGPQRDDAAD*
Ga0182008_100792362	3300014497	Rhizosphere	MQKSLIAFLREAADSLRELALRTPDIANELRRFADDLERAAERAHGNGGTPEDDAAD*
Ga0182008_101990312	3300014497	Rhizosphere	AFLREAADSLRELALRTPDIANELRRFAGDLEREAERAYRNGGTPEDDAAD*
Ga0134072_101527202	3300015357	Grasslands Soil	MPKNLTEFLREAAASLRDLALRAPDIANELRRFADDLEQEVQRAARDERPRNNNAAD*
Ga0184605_103786992	3300018027	Groundwater Sediment	MFNRYMPKNLTEFLRDAAASLRDLALRAPDIASELRRFAGDLEEEAQRAARDDRPSDKHDAAD
Ga0184619_101953331	3300018061	Groundwater Sediment	MFNRYMPKNLTEFLRDAAASLRDLALRAPDIASELRRFAGDLKEEAQRAARDDRPSDKHDAAD
Ga0066667_102151721	3300018433	Grasslands Soil	TMQEDLPTFLRDAAASLRDLALRAPDIANELRRFADDLEQDAERAERDVRPDRDDAA
Ga0066667_112182591	3300018433	Grasslands Soil	MFHRDAAASLRDLALRAPDIANELRRFADDLDEEAERGNRPRKDDAAD
Ga0066662_101101385	3300018468	Grasslands Soil	MQENLSMFLHGAAASLRDLALRAPDIANELRRFADELEEAAERAARDTRLGRHDAAD
Ga0066662_125839291	3300018468	Grasslands Soil	MQKDLTAFLHEAAESLRDLALRAPDIANELRRFADDLERQAEQRRRDRTSEDDAAD
Ga0066669_104058093	3300018482	Grasslands Soil	MQENLPTFLRDAAVSLRDLALRAPDIANELRRFADDLERDAERAERDARPDRDDAA
Ga0066669_120147272	3300018482	Grasslands Soil	MPKNLTEFLSEAAASLRDLALRAPDIANELRRFADDLEQEVQRAARDERPRNNNAAD
Ga0193722_10343642	3300019877	Soil	MFNRYMPKNLTEFLRDAAASLRDLALRAPDIASELRRFASDLEEEAQRAARDDRPSDKHDAAD
Ga0193728_12240141	3300019890	Soil	MFNRYMPKNLTEFLRDAAASLRDLALRAPDIASELRRFAGDLEEEAQRAARDDRPSDK
Ga0193735_10952791	3300020006	Soil	MQENLSVFLHGAAASLRDLALRAPEIANELRRFADELEEAAERAARDTRLGRH
Ga0213873_101314691	3300021358	Rhizosphere	MPKSLIEFRREAAASMCDLALRAPDIANELRRLADEVEHTAERAARDDHASNNDKAAD
Ga0213876_101223781	3300021384	Plant Roots	TKLAYDWSCSMRTMPKSLSVFLREAADRMRDLALRAPEIANELRRLADDLEQGADRATREDRSWEDDEAAG
Ga0207699_104071331	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MQENLPTFLRDAAASLRDLALRAPDIANELRRFADDLERQADQAERNIGPQRDDAAD
Ga0207663_108905142	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MQKNLPTFLRDAAASLRDLALRAPDIANELRRFADDLEQEAESVARNLRQGRDDAAD
Ga0207649_112446941	3300025920	Corn Rhizosphere	MQKSLPTFLRDAAASLRDLALRAPDIANELRRFADDLEQEAESVARDLRQGRDDAAD
Ga0207664_119096712	3300025929	Agricultural Soil	MQKNLPTFLRDAAASLRDLALRAPDIANELRRFADDLEQEADTAERNSRTSRDDAAD
Ga0207641_119867881	3300026088	Switchgrass Rhizosphere	MQENLPTFLRDATASLRDLALRTPDIANELRRFADDLEQEADAAERNTRPSRDDAA
Ga0209688_10588471	3300026305	Soil	VPKNLTEFLSEAAASLRDLALRAPDIANELRRFADDLEQEVQRAARDERPRNNNAAD
Ga0209471_11084241	3300026318	Soil	PCSIWIMRKDVTMFLRDAAASLRDLALRAPDIANELRRFADDLDEAAERGNRPRKDDAAD
Ga0209156_101944033	3300026547	Soil	VPKNLTEFLSEAAASLRDLALRAPDIANELRRFADDLEQEAQRAARDERPRNNNAAD
Ga0209156_102033973	3300026547	Soil	LSSGMSCSIGTMQENLSMFLHSAAASLRDLALRAPEIANELRRFADELEEAAERAARDTRLGRHDAAD
Ga0308189_102163631	3300031058	Soil	RKDVPMFLREAAASLRDLALHAPDIANELRRFADDLDEEAERGNRPPKDDAAD
Ga0310813_105846411	3300031716	Soil	MQENLPTFLRDAAASLRDLALRTPDIANELRRFADDLEQEADAAERNTRPSRDDAAWLTLNSSQSCSRV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070476

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences