Basic Information | |
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Taxon OID | 3300006806 Open in IMG/M |
Scaffold ID | Ga0079220_10055185 Open in IMG/M |
Source Dataset Name | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1891 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.8834 | Long. (o) | -83.4195 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021365 | Metagenome | 219 | Y |
F026654 | Metagenome / Metatranscriptome | 197 | Y |
F071525 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079220_100551851 | F021365 | N/A | MESPKRTTSVTGAWRTVAQTVTPPAVYWLVLSLITFLGMSEVIKVEATRTRLSLVVVVVGVAFSAACFLERLLRDYVRTEVQSHAEPSDVSGSLPK |
Ga0079220_100551852 | F026654 | AGGA | VTLLLVMVFEISVAMAIGFVLGRIWQIRCDLEQERVGGFTAPPIARIPRL* |
Ga0079220_100551853 | F071525 | AGAAGG | MRRTVCAFAVATLICTATYGRAAPIAPLAGIQAGQADVTPVYSHHSRHQYIVIPLTRRYAYRPYWWPQGQYHWSPFGLERWGYWCEGAGAHRLSC* |
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