Scaffold Ga0079220_10055185

Overview

Basic Information

• Taxon OID: 3300006806
• Scaffold ID: Ga0079220_10055185
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1891
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021365	Metagenome	219	Y
F026654	Metagenome / Metatranscriptome	197	Y
F071525	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079220_100551851	F021365	N/A	MESPKRTTSVTGAWRTVAQTVTPPAVYWLVLSLITFLGMSEVIKVEATRTRLSLVVVVVGVAFSAACFLERLLRDYVRTEVQSHAEPSDVSGSLPK
Ga0079220_100551852	F026654	AGGA	VTLLLVMVFEISVAMAIGFVLGRIWQIRCDLEQERVGGFTAPPIARIPRL*
Ga0079220_100551853	F071525	AGAAGG	MRRTVCAFAVATLICTATYGRAAPIAPLAGIQAGQADVTPVYSHHSRHQYIVIPLTRRYAYRPYWWPQGQYHWSPFGLERWGYWCEGAGAHRLSC*