NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075464_10014996

Scaffold Ga0075464_10014996


Overview

Basic Information
Taxon OID3300006805 Open in IMG/M
Scaffold IDGa0075464_10014996 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3907
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011918Metagenome / Metatranscriptome285Y
F033721Metagenome / Metatranscriptome176Y
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F057984Metagenome / Metatranscriptome135N
F091592Metagenome107N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0075464_100149961F011918N/ASDCAQLWAYKYASENPKCACVSVVLAANDPETLVIHRWSEDELYEAGIAFQAMLKVWAWSKKYNPPGMKL*
Ga0075464_100149962F039994GGAMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDRPVFDYHITRCVKHAVTAQQQIHLNHPNPDESGENALDHLERAVVRALFAWMQLKKGLPRL*
Ga0075464_100149963F033721GAGMDAVKERIAKTMRWIRKELDEEGKPEWAVYIDKTGESNESEWSHFDTYKTRDDAVQACQRFTWEDYDCSDK*
Ga0075464_100149965F039993N/AMKIALSWLLYHIGDILNHNVLRYGYGYSLYNKIMLLSSDLDDKGVIWKDAK*
Ga0075464_100149967F102824N/AMTSVRVQREEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIDDLFEDKAKAQDAADLWNAYSMWCQERSGKRKRR*
Ga0075464_100149968F091592GGAMISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNRIGKLSDCNCYRDTKEVRSLVRDVKNGTVLFWCKVAGVRIDQATLNRVIKRGIGNVN*
Ga0075464_100149969F057984GGAMRNYDSNHSVPGGLSILALGPRERGKINMDGLGQIKILAERKIEMIELDIEVDDKTRDIVCHAALREIISDGDALFNYGFNQAIKRFIQTKGKKCTKKSSSKKRLRR*
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