Scaffold Ga0075464_10000924

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10000924
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13094
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (93.10%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009529	Metagenome / Metatranscriptome	316	Y
F020352	Metagenome	224	Y
F058137	Metagenome	135	Y
F089589	Metagenome	109	Y
F104729	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_1000092417	F104729	GGCGG	VNLFSVHNATDGSVVLYLEEQDANLDLLEDVVAQVPLLALSRLAEHSGLDSLKSQEAARLLDKVRAQLPDIAVKLASITEEEALALAEQLILAVKFARAVAGKPTKLELVK*
Ga0075464_1000092421	F089589	N/A	MTSNRLWIDDNGTVVCDDHAGTYLRSAFEANSEAIQHRTPLGTWCAYYTHLIGGANLVCEVCTPWDSPNHPYNQKVGA*
Ga0075464_1000092423	F058137	GAG	MKLKKIRSVRVSDQLWRKAQAKARAEGKSLSEAINDFLKEYVK*
Ga0075464_100009244	F009529	AGG	MQCLVCKKETEGECRSCFGRLRATLKELPQLQFEAGFYLEPSRTGSGAVSAERSIGINVNALDFSMATDLLAILHGWEGIIRRDRALTPPALVKREPTTDLEVQATCEFHIAHLSWTLTQPWALDFAGEVWGLHARGRAAAKKFKEQARRIPCPTDDCNRFVVIDVEQMSQDVSCFGCKQSWSVLRLVALAMSNPNRRFFLDIEAIAAWLQMTEREVYRAVRKFGIEKRGSTYDLQALMKVRQQNA*
Ga0075464_100009245	F020352	GGA	MNQDFKPINCSRCGALIWAGISWAGFARRLDTPVLTIEEEIIKRINKLMTFECHKTKVSFEAVERSANRIKWGKAKRSVILGEHHCSSFKLFEATPPNYWKELDYVERPF*