Scaffold Ga0070749_10000353

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10000353
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30598
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (10.20%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F070124	Metagenome / Metatranscriptome	123	N
F073424	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000035319	F038672	N/A	MDELDVLLRKNKLDILIIKASHQLEKKKDKVKRDGLETLVDILELIHELQDEIRKQRKQIAKLKYENAVSYKENAILKTSFDKYKHDLKKAELESSNLKDNE*
Ga0070749_1000035322	F030436	N/A	MKSTLERIAELIEEYNNTNIFDGNKLNQQLKELTSRLYHIETMRTKAHEDYEKVIHTKVAEGFSVARATNEAKVEVPEMYQLRRLLESGYRVVDAMRTNISFLKSELYNVTKD*
Ga0070749_1000035323	F056150	AGG	VNNKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGEDFIIRLDSENSIKKYVYKLCIFQIISERSRYKTKYYIPSHFSSLEDIETYTNTCFKDEVLKDLINSLEGLDKIMLEHLLLCSGNKQCLAKKTNIHQNTIQYKFKELANKIKKNWSINEFYT*
Ga0070749_1000035327	F043411	N/A	MIDEKTKRFINEIMKRRLTYNGKRVYIKSLGTKRALVSHYKENDYKMFKVDVKDLADFK*
Ga0070749_1000035328	F073424	AGCAG	MKLTPKEIKEQKALFGSKPVNYFVRFMAAKEKWKRLPDYFIKQVIENTLK*
Ga0070749_1000035332	F029278	N/A	MKITIPTKWEDVTIGKYINLRPVLNSELTPINRVINILAVLTGQKKEVIKNISLDQYQSIKEKMSFLETELPRELKNNKFKIGDKWYKFELKAQNLIFAEYINIMEILQSAKDDQEAIFNNLHRILTTICRPIKKRFFMWHNIKMDAELIRETQQNFFDNMPMTIAYPIGVFFYTHSETLTEIIKTCLMEEAERLKRETETEIASIKGGDGGKH*
Ga0070749_1000035333	F020903	N/A	MSEQLDIFGFDVDQLEEVKIDNPSTLAEVFNNIAADMVFCLKQSVKKEKLTYKGGLLESIKMPVKMFGFRMIATLFLADYYDYVNKGVRGIGGTRKTENGKYITGPMKAWEIKAPDSPYQFKKGPSVNHIKQWAKSKGLNEYAVRTSIAHKGIRPRYFFDNCMKETFYGETFNRFKTDIRVVSGERVAKGLKEILEK*
Ga0070749_1000035335	F070124	N/A	MDNKQTNLEDLIKKMEKLPVPERTCNIEDENCESCSG*